This site provides computational biology resources that are related to the genome/transcriptome of the model plant Physcomitrella patens (Aphanoregma patens).

The Physcomitrella genome has been sequenced by whole-genome shotgun at the JGI (why?). The version 1.1 of the assembled and annotated genome has been released to the public in April 2007. The data are available e.g. for BLASTing on this site, the JGI genome browser is available here. If you are interested in manual annotation see mossgenome.org for details.

These resources are currently available on this site (please use the menu above to access them):

BLAST service against the assembled transcriptome and the genome traces (reads)

Sequence retrieval and visualization of sequence annotation

Functional annotation of the virtual transcripts and keyword search

Physcomitrella-specific splice site prediction

The Physcomitrella ecotype map and genetic map

Information about the Physcomitrella genome, associated literature, UTR repeats etc.

PlanTAPDB: a phylogeny-based resource of plant transcription associated proteins