ATP - Ambiguous Targeting Prediction

Citation: Mitschke J., Fuss J., Blum T., Höglund A., Reski R., Kohlbacher O., Rensing S.A. (2009): Prediction of dual protein targeting to plant organelles. New Phytol. epub Apr 7th

This SVM-tool tests whether the first 70 amino acids of a plant protein sequence are likely to encode an ambiguous mt/pt targeting signal. If so, the mature protein might be dually targeted to mitochondria and plastids.

The score interval ranges from 0.0 to 1.0, the higher the score, the more reliable it is. A maximum of 1MB or 50 sequences can be predicted at a time.

Input:
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The training and test data in fasta format: positive training (43), positive testing (7), negative training (44), negative testing (27).

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