P. patens genome browser V1.5 pre-release

Showing 20 kbp from scaffold_275, positions 20,909 to 40,908

Instructions  Instructions Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Examples: scaffold_275:20909..40908.
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Landmark or Region:	Reports & Analysis: Annotate Restriction Sites Download Decorated FASTA File Download GFF File Download Sequence File
Data Source P. patens genome browser V1.5 pre-release	Scroll/Zoom:    Show 500 kbp Show 100 kbp Show 80 kbp Show 40 kbp Show 20 kbp Show 15 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 500 bp Show 200 bp Show 100 bp    Flip

 Overview

 Overview

 Region

 Region

 Details

 Details

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 Tracks

 Tracks

 Overview

 Overview

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Gap:overview

STS_SSRs:overview

STS_AFLPs:overview

 Region

 Region

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Gap:region

STS_SSRs:region

STS_AFLPs:region

 Analysis

 Analysis

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Restriction Sites

 Evidences

 Evidences

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Probes of the V1.2 Combimatrix whole genome array	FLcDNA evidence	plant protein homology evidence
EST evidence	Assembled transcript evidence pp0304 and pp0409	454 reads sexual gametophores (normalized library)
Villersexel EST evidence	Assembled transcript evidence from Ceratodon purpureus and Tortula (Syntrichia) ruralis	PFAM domains

 General

 General

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DNA/GC Content

6-frame translation

Gaps

 Genes

 Genes

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CDS and UTR ppref genes	V1.5 coding	V1.1 coding	all predicted CDS and UTR models
User annotated models	V1.2 coding	V1.0 coding

 Markers

 Markers

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SSR_exons

AFLPs

 Repeats

 Repeats

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RepeatMasker repeats

repeats

 Non-protein coding genes

 Non-protein coding genes

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predicted tRNA genes	RFAM ncRNAs detected with Infernal/cmsearch	miRNA precursors miRBase 10
putative rRNA genes	putative norgDNA	miRNA mature

 Transposable elements

 Transposable elements

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LTR_STRUC LTR_retrotransposon	LTR_seq long_terminal_repeat	MIPS ANGELA long_terminal_repeat	Helitrons Bennetzen lab
LTR_seq LTR_retrotransposon	MIPS angela LTR_retrotransposon	TE related PFAM domains

 Display Settings

 Display Settings

Image Width 480 640 800 1024 1280	Region Size (bp)	Key position Between Beneath Left Right	Track Name Table Alphabetic Varying
Highlight feature(s) (feature1 feature2...)	Highlight regions (region1:start..end region2:start..end)	Show grid

 Add your own tracks

 Add your own tracks

Upload your own annotations: [Help] Upload a file     Add remote annotations: [Help] Enter Remote Annotation URL --Choose Preset URL-- vmatch

$Id: physcome.conf,v 1.30 2009/06/30 zimmer lang$

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Generic genome browser version 1.68