Specifications ============== Sequence source file: "Adiantum_capillus_veneris.PUT.fasta" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 7903 Total size of examined sequences (bp): 3818420 Total number of identified SSRs: 268 Number of SSR containing sequences: 237 Number of sequences containing more than 1 SSR: 25 Number of SSRs present in compound formation: 18 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 184 3 78 4 5 6 1 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 total AC - 1 3 3 1 2 10 AG - 5 2 3 4 3 1 2 20 CA - 8 3 3 2 1 4 1 22 CG - 1 1 CT - 11 4 3 2 1 1 2 1 2 1 28 GA - 14 4 6 4 5 1 1 1 36 GC - 1 1 GT - 6 2 3 3 1 15 TC - 13 7 6 3 1 3 1 1 2 37 TG - 5 6 2 1 14 AAG 1 1 ACT 1 1 ATC 2 2 ATG 18 18 CAA 1 1 CAC 1 1 CAG 2 1 3 CAT 5 1 6 CCA 1 1 CGC 1 1 CTC 2 2 CTG 1 1 CTT 2 1 1 4 GAA 1 1 GAG 1 1 GAT 2 2 GCA 1 1 GCT 2 1 3 GGC 1 1 GTG 3 7 10 GTT 1 1 TAG 1 1 TCA 1 1 1 1 4 TCC 1 1 TCG 1 1 TCT 2 2 TGC 1 1 TGG 1 2 3 TTC 1 1 2 TTG 1 1 AAAC 1 1 AGAT 1 1 CTTT 1 1 GAAT 1 1 GTGC 1 1 GGCACA 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 total AC/GT - 20 14 11 5 2 6 1 1 1 61 AG/CT - 43 15 17 12 11 8 1 1 2 4 1 3 2 1 121 CG/CG - 1 1 2 AAC/GTT 2 1 3 AAG/CTT 5 2 1 1 1 10 ACC/GGT 6 9 15 ACG/CTG 4 1 5 ACT/ATG 21 21 AGC/CGT 4 1 5 AGG/CCT 2 1 1 4 AGT/ATC 9 2 1 1 13 CCG/CGG 1 1 2 AAAC/GTTT 1 1 AAAG/CTTT 1 1 AATG/ACTT 1 1 ACGC/CGTG 1 1 AGAT/ATCT 1 1 ACAGGC/CCGTGT 1 1