Specifications ============== Sequence source file: "ONGI.091703" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 11726 Total size of examined sequences (bp): 8741722 Total number of identified SSRs: 340 Number of SSR containing sequences: 318 Number of sequences containing more than 1 SSR: 19 Number of SSRs present in compound formation: 16 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 110 3 215 4 10 5 2 6 3 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 total AC - 5 4 1 1 1 1 13 AG - 4 1 5 AT - 5 3 2 1 1 1 1 1 3 1 2 1 1 1 1 2 27 CA - 2 1 1 1 5 CG - 1 1 CT - 3 2 5 GA - 4 4 GT - 3 1 4 TA - 9 6 5 1 1 1 1 1 1 1 1 1 1 1 31 TC - 5 5 TG - 5 1 3 1 10 AAC 2 1 1 4 AAG 6 6 12 AAT 1 5 1 1 8 ACA 3 1 4 ACC 1 1 2 AGA 9 1 1 11 AGC 4 5 1 10 ATA 2 2 ATC 2 2 1 5 ATG 6 2 1 9 CAA 2 1 3 CAC 4 1 5 CAG 7 2 3 2 1 15 CAT 4 1 5 CCA 1 1 2 CCG 1 1 1 3 CCT 5 3 1 9 CGA 3 3 CGC 1 1 CGG 1 1 CTC 3 2 1 6 CTG 1 1 2 CTT 4 1 5 GAA 6 6 GAC 4 1 5 GAG 2 1 3 GAT 3 2 5 GCA 5 3 2 1 1 12 GCC 1 1 2 GCG 1 1 2 GCT 1 1 GGA 2 2 GGC 1 1 GGT 1 1 GTG 1 1 TAA 1 1 2 TAC 1 1 TAG 2 2 TAT 2 2 TCA 4 4 TCC 10 1 1 1 13 TCG 1 1 TCT 3 1 1 1 6 TGA 2 1 3 TGC 1 1 TGG 2 2 TGT 1 1 TTA 1 1 2 TTC 3 3 1 7 AAAG 1 1 ACAT 1 1 2 ATAC 1 1 ATTT 1 1 CTGC 1 1 GTAT 1 1 TACA 1 1 TATG 1 1 TTTA 1 1 AGCTG 1 1 TCACG 1 1 AAAAAT 1 1 CTGTTG 1 1 TATTAG 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 total AC/GT - 15 7 4 1 1 1 1 1 1 32 AG/CT - 16 3 19 AT/AT - 14 9 2 6 1 2 1 1 1 1 4 1 2 1 3 1 1 1 1 2 1 1 1 58 CG/CG - 1 1 AAC/GTT 7 2 3 12 AAG/CTT 31 11 1 1 1 1 1 47 AAT/ATT 7 7 1 1 16 ACC/GGT 9 3 1 13 ACG/CTG 9 3 12 ACT/ATG 12 5 1 18 AGC/CGT 16 10 6 4 1 1 38 AGG/CCT 22 6 4 1 33 AGT/ATC 12 3 1 16 CCG/CGG 5 4 1 10 AAAG/CTTT 1 1 AAAT/ATTT 2 2 ACAT/ATGT 2 2 1 1 6 ACGG/CCTG 1 1 ACGTC/AGTGC 1 1 ACTCG/AGCTG 1 1 AAAAAT/ATTTTT 1 1 AACGAC/CTGTTG 1 1 AATCAT/AGTATT 1 1