Specifications ============== Sequence source file: "AQGI.092705" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 17801 Total size of examined sequences (bp): 20095776 Total number of identified SSRs: 4823 Number of SSR containing sequences: 3550 Number of sequences containing more than 1 SSR: 942 Number of SSRs present in compound formation: 670 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 1 2 1483 3 3050 4 184 5 42 6 63 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC - 7 5 1 1 1 1 16 AG - 81 54 44 20 16 14 12 5 3 6 2 6 4 3 2 4 3 2 2 1 2 1 287 AT - 38 11 13 7 6 4 3 1 1 1 1 1 1 1 89 CA - 13 6 2 1 1 1 24 CG - 1 1 CT - 57 43 38 27 14 19 10 11 9 8 7 3 5 3 5 4 2 3 1 2 2 3 1 1 1 2 1 282 GA - 32 32 17 6 8 8 9 4 2 4 5 4 4 1 2 1 1 140 GT - 8 5 4 2 1 1 1 22 TA - 33 21 13 4 3 5 2 2 2 1 1 1 1 89 TC - 106 82 60 48 37 37 28 18 15 11 12 11 4 8 4 7 7 3 3 1 1 2 1 1 2 1 510 TG - 14 3 2 1 2 1 23 AAC 35 29 14 7 4 2 1 1 93 AAG 99 46 20 15 6 4 4 3 2 1 1 1 202 AAT 20 10 3 3 1 1 2 1 41 ACA 18 25 13 8 6 1 71 ACC 7 10 13 3 1 3 37 ACG 1 1 ACT 20 14 4 3 41 AGA 60 33 30 8 9 3 2 145 AGC 14 1 2 17 AGG 4 5 4 1 14 AGT 12 6 5 2 1 1 27 ATA 8 6 1 4 1 20 ATC 28 9 13 5 2 3 1 1 62 ATG 21 10 6 1 2 1 41 ATT 9 4 2 1 3 1 20 CAA 64 35 23 12 9 4 4 1 2 154 CAC 24 11 12 6 5 5 63 CAG 30 7 5 3 45 CAT 30 10 11 2 2 1 56 CCA 28 12 15 6 3 1 1 66 CCG 1 1 CCT 1 1 2 CGA 1 1 CGT 3 1 4 CTA 20 11 3 1 35 CTC 11 3 14 CTG 9 7 3 19 CTT 81 48 35 19 12 7 4 4 4 1 1 216 GAA 99 45 31 13 6 5 2 1 1 1 204 GAC 5 1 6 GAG 4 2 3 2 2 13 GAT 26 8 9 3 1 47 GCA 14 8 4 2 28 GCT 11 6 1 18 GGA 7 4 4 15 GGC 1 1 GGT 15 10 5 1 2 1 34 GTA 9 3 2 1 1 16 GTC 1 1 2 GTG 24 9 9 1 1 44 GTT 12 4 3 1 2 2 1 25 TAA 12 15 3 4 1 35 TAC 21 15 4 2 42 TAG 12 6 3 21 TAT 8 2 1 11 TCA 42 14 15 2 5 1 79 TCC 8 5 4 1 18 TCG 1 1 2 TCT 137 80 41 24 10 9 4 1 1 1 308 TGA 27 9 9 2 1 48 TGC 12 3 2 17 TGG 24 9 6 4 3 1 1 48 TGT 9 2 5 1 17 TTA 10 4 1 15 TTC 162 111 44 31 22 14 6 4 5 1 1 1 402 TTG 12 4 3 4 2 1 26 AAAC 1 1 1 3 AAAG 5 3 2 1 11 AACA 1 1 AAGA 4 4 8 AAGC 1 1 2 AAGG 1 1 AATA 2 2 AATC 3 3 AATT 1 1 2 AGAA 5 4 1 10 AGAT 3 2 5 ATAA 1 1 ATAG 1 3 1 5 ATCT 1 1 2 ATGA 1 1 ATTC 2 2 ATTG 2 2 ATTT 2 1 3 CAAA 1 1 CAAT 1 1 CAGA 1 1 CCAT 1 1 CCTT 1 1 2 CTCA 2 2 CTGA 1 1 CTTC 2 2 4 CTTG 2 2 CTTT 4 1 1 1 1 8 GAAA 4 4 1 1 10 GAAG 1 1 GAAT 1 1 GAGT 1 1 GATA 1 2 1 1 5 GATT 1 1 GCTT 1 1 GGAT 1 1 2 GGTT 1 1 GTTA 1 1 2 GTTT 2 2 TAAG 1 1 TACA 1 1 TAGA 1 1 TATC 1 1 1 3 TATT 1 1 TCAT 4 4 TCCC 1 1 TCCT 1 1 TCTA 1 1 2 TCTT 8 3 2 13 TGAG 1 1 2 TGGT 2 2 TGTT 1 1 TTAA 1 1 TTCA 2 2 TTCC 1 1 TTCT 8 1 9 TTGA 1 1 2 TTGG 1 1 TTGT 1 2 1 4 TTTA 2 2 TTTC 7 1 4 12 TTTG 3 3 AAAAG 1 1 AAACA 1 1 AAAGA 1 1 AAATC 2 1 3 AAGAG 1 1 2 AATCA 1 1 ACAAA 2 2 AGAAG 3 3 AGAGA 2 2 AGAGC 1 1 ATCCA 2 2 ATTCG 1 1 CAAGG 1 1 CAATT 1 1 2 CCAAT 1 1 CTCTT 1 1 GAAGA 1 1 GAGAA 2 2 GAGCA 1 1 GATTT 1 1 2 GTTGT 1 1 TCAAA 1 1 TCTCA 1 1 TCTCT 1 1 TCTTC 1 1 TGAAT 1 1 TGAGT 1 1 TGTGT 1 1 TTCTC 1 1 TTCTT 1 1 TTTGG 1 1 AAAATT 1 1 AACCCT 1 1 AACCTA 1 1 AATCTT 1 1 AATTAG 1 1 ACAATC 1 1 ACAGCA 1 1 ACCAAA 1 1 ACCAAT 1 1 ACCACT 1 1 ACTCCT 1 1 AGATTC 1 1 AGGGTC 1 1 AGTAGG 1 1 ATCTCA 1 1 ATGAAG 1 1 CAAAAC 1 1 CAACAG 2 1 3 CAACAT 1 1 CAATAC 1 1 CAATCG 1 1 CACCAA 1 1 CACTAC 1 1 CATCAG 1 1 CATCTC 1 1 CATCTT 1 1 CCAGCA 1 1 CTCGAC 1 1 CTGCTC 1 1 CTGTGT 1 1 CTTTCT 1 1 GAAATC 1 1 GAAGGA 1 1 GATGAA 1 1 GGAGTT 1 1 GGCGAT 1 1 GGTATT 1 1 GTAGAA 1 1 GTGAAG 1 1 GTGTAA 1 1 GTTGCT 1 1 TAATGG 1 1 TACTTC 1 1 TCAAGT 1 1 TCAATC 1 1 TCCAAC 1 1 TCCACC 1 1 TCGTGG 1 1 TCTTCA 1 1 TCTTTC 1 1 TGCTCC 1 1 TGGAGT 1 1 TGGTGT 1 1 TGTGCT 2 2 TGTGTT 1 1 TTCGAC 1 1 TTCTGC 1 1 TTCTGG 1 1 TTGAAA 1 1 TTGTTT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 42 19 9 3 4 1 1 2 1 1 1 1 85 AG/CT - 276 211 159 101 75 78 59 38 27 27 25 25 13 18 15 16 12 10 4 5 3 5 6 1 1 3 2 2 1 1 1219 AT/AT - 71 32 26 11 9 9 5 2 3 1 1 2 1 1 1 1 1 1 178 CG/CG - 1 1 AAC/GTT 150 99 61 33 23 9 5 3 3 386 AAG/CTT 638 363 201 110 65 42 22 12 12 1 3 4 1 1 1 1 1477 AAT/ATT 67 41 11 12 5 1 3 1 1 142 ACC/GGT 122 61 60 21 14 11 2 1 292 ACG/CTG 38 16 7 1 62 ACT/ATG 135 67 35 9 4 2 2 254 AGC/CGT 62 18 10 6 2 98 AGG/CCT 35 19 16 3 3 76 AGT/ATC 133 48 49 12 10 4 2 2 1 261 CCG/CGG 1 1 2 AAAC/GTTT 9 4 2 15 AAAG/CTTT 45 21 10 2 2 1 81 AAAT/ATTT 8 1 9 AACC/GGTT 4 4 AACG/CTTG 3 3 AACT/ATTG 3 1 1 5 AAGC/CGTT 1 1 2 AAGG/CCTT 4 4 1 1 10 AAGT/ATTC 9 9 AATC/AGTT 5 1 6 AATG/ACTT 1 1 2 AATT/AATT 2 1 3 ACAG/CTGT 1 1 ACAT/ATGT 1 1 ACCT/ATGG 1 1 2 ACTC/AGTG 3 2 5 ACTG/ACTG 1 1 AGAT/ATCT 7 7 4 3 1 1 23 AGGG/CCCT 1 1 AGGT/ATCC 1 1 AAAAC/GTTTT 3 3 AAAAG/CTTTT 2 1 3 AAACC/GGTTT 1 1 AAACT/ATTTG 1 1 2 AAATC/AGTTT 3 2 5 AACAC/GTGTT 2 2 AACTC/AGTTG 1 1 AACTT/AATTG 1 1 AAGAG/CTCTT 10 4 14 AAGCT/ATTCG 1 1 AAGGC/CCGTT 1 1 AAGTT/AATTC 1 1 2 AATCC/AGGTT 1 2 3 AGAGC/CGTCT 2 2 AGAGT/ATCTC 1 1 AAAAAC/GTTTTT 1 1 AAAACC/GGTTTT 2 2 AAAATT/AATTTT 1 1 AAACAC/GTGTTT 1 1 AAACCT/ATTTGG 1 1 AAAGAG/CTCTTT 1 1 2 AAATCG/AGCTTT 1 1 AAATTG/AACTTT 1 1 AACACC/GGTTGT 1 1 AACACG/CTTGTG 2 2 AACAGC/CGTTGT 2 1 1 4 AACATC/AGTTGT 1 1 AACCAC/GGTGTT 1 1 AACCAT/ATTGGT 1 1 AACCCT/ATTGGG 1 1 AACCTC/AGTTGG 1 1 2 AACGAC/CTGTTG 1 1 AACTCC/AGGTTG 1 1 AAGACC/CTGGTT 1 1 AAGACG/CTGCTT 1 1 AAGATG/ACTTCT 2 1 3 AAGCTG/ACTTCG 1 1 AAGGAG/CCTCTT 1 1 AAGGTG/ACTTCC 1 1 AAGTAG/ATCTTC 3 3 AAGTCT/AGATTC 1 1 AAGTGT/ACATTC 1 1 AAGTTC/AAGTTC 1 1 AATACC/ATGGTT 2 2 AATCAC/AGTGTT 1 1 AATCGC/AGCGTT 1 1 AATCTC/AGAGTT 2 2 AATCTT/AATTAG 2 2 AATGGT/ACCATT 1 1 ACACAG/CTGTGT 1 1 ACCACT/ATGGTG 1 1 2 ACCAGC/CGTGGT 1 1 2 ACCGCT/ATGGCG 1 1 ACCTCC/AGGTGG 1 1 ACCTCG/AGCTGG 1 1 ACGAGG/CCTGCT 1 1 2 ACTCCT/AGGATG 1 1 AGAGGT/ATCTCC 1 1 AGCATC/AGTCGT 1 1 AGGAGT/ATCCTC 1 1 AGGGTC/AGTCCC 1 1