Specifications ============== Sequence source file: "AGI.051603" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 42301 Total size of examined sequences (bp): 50086382 Total number of identified SSRs: 5692 Number of SSR containing sequences: 4789 Number of sequences containing more than 1 SSR: 729 Number of SSRs present in compound formation: 363 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 3 2 1760 3 3861 4 28 5 6 6 34 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC - 18 14 8 1 5 1 2 1 1 51 AG - 107 62 49 26 24 10 2 3 5 6 2 3 1 1 1 1 1 1 1 1 1 308 AT - 48 17 12 9 9 8 5 2 3 3 1 1 1 2 121 CA - 25 9 2 1 1 1 1 1 41 CG - 2 1 3 CT - 112 73 45 25 6 8 5 4 1 3 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 3 3 316 GA - 61 39 22 19 8 1 1 4 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 172 GC - 2 2 GT - 15 9 2 1 1 1 29 TA - 47 26 12 5 6 4 4 4 3 1 1 1 114 TC - 226 122 81 48 25 9 10 4 4 1 3 2 3 1 1 2 2 1 1 1 1 3 551 TG - 25 14 10 3 52 AAC 72 24 13 3 3 2 2 1 1 1 122 AAG 141 53 36 13 7 1 1 1 1 254 AAT 11 4 1 16 ACA 45 21 13 5 2 2 1 1 1 1 1 93 ACC 9 4 3 2 3 21 ACG 9 9 ACT 4 4 1 1 1 11 AGA 123 70 24 9 3 4 1 1 1 1 1 1 239 AGC 23 9 1 1 34 AGG 18 9 1 2 30 AGT 9 2 1 12 ATA 8 1 9 ATC 51 38 7 5 3 4 2 110 ATG 51 24 7 6 2 3 1 2 96 ATT 5 2 7 CAA 79 43 19 7 1 2 2 1 1 155 CAC 34 8 3 2 47 CAG 31 7 1 1 40 CAT 43 21 11 5 2 1 1 84 CCA 38 11 5 54 CCG 10 1 11 CCT 26 13 5 1 1 46 CGA 9 3 12 CGC 4 4 CGG 3 2 5 CGT 4 4 CTA 4 2 6 CTC 56 24 2 82 CTG 1 1 CTT 141 44 29 15 8 9 1 1 2 2 252 GAA 247 108 47 14 6 4 4 1 1 1 1 1 1 1 1 438 GAC 11 1 1 13 GAG 36 8 6 1 1 52 GAT 85 52 15 15 5 4 1 2 1 1 2 1 1 185 GCA 19 7 26 GCC 1 1 GCG 6 6 GCT 10 6 16 GGA 48 24 11 4 1 88 GGC 6 6 GGT 33 13 5 1 52 GTA 9 1 10 GTC 4 1 5 GTG 13 6 4 1 24 GTT 5 1 1 7 TAA 4 1 5 TAC 2 3 2 7 TAG 4 1 1 6 TAT 1 2 3 TCA 58 26 11 3 1 2 101 TCC 40 12 7 4 63 TCG 8 3 1 12 TCT 198 73 41 13 9 9 4 3 1 2 4 357 TGA 90 36 12 6 3 2 4 1 1 2 1 158 TGC 19 5 1 25 TGG 19 14 1 4 1 39 TGT 11 4 1 4 20 TTA 4 1 5 TTC 134 64 12 8 6 1 1 1 1 228 TTG 17 11 3 1 2 1 2 37 AAAC 2 1 3 AACA 1 1 AATC 1 1 ATAA 1 1 ATAC 1 1 ATAG 1 1 ATCT 2 2 CACT 1 1 CTTT 3 3 GAAA 1 1 GACG 1 1 GTTT 1 1 TATG 1 1 2 TCAT 1 1 TCTT 2 2 TTGT 1 1 TTTC 2 2 TTTG 2 1 3 AAAAC 1 1 AGAGA 1 1 ATTGA 1 1 CTCTT 1 1 TCTCT 1 1 TTTTG 1 1 AAGAAC 1 1 AAGGAG 1 1 AGATGG 1 1 ATGAAG 1 1 ATGGCA 1 1 CAAAAC 1 1 CAAGAA 1 1 CAGTCT 1 1 CATCAC 1 1 CCTCCA 1 1 CCTGAG 1 1 CGGTCA 1 1 CTATGC 1 1 CTCAAA 1 1 CTGAGC 1 1 GAACCG 1 1 GAGACT 1 1 GAGCCG 1 1 GAGGCT 1 1 2 GATTGT 1 1 GCAGAA 1 1 GGACGT 1 1 GGAGAA 2 2 GGTGAT 1 1 GTAGAG 1 1 GTGATG 1 1 TCCCCA 1 1 TCCGTC 1 1 TCTCTT 1 1 TCTGCT 1 1 TCTTCA 1 1 TGATGT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC/GT - 83 46 20 7 7 2 3 2 1 1 1 173 AG/CT - 506 296 197 118 63 28 18 11 10 14 7 5 5 3 3 1 2 2 3 2 3 3 1 2 3 3 3 2 1 1 1 2 2 1 1 1 1 3 1 1 4 1 4 6 1 1 1347 AT/AT - 95 43 24 14 15 12 9 6 6 4 1 2 2 2 235 CG/CG - 4 1 5 AAC/GTT 229 104 50 20 8 7 5 1 2 1 1 2 1 2 1 434 AAG/CTT 984 412 189 72 39 27 12 8 2 2 2 5 5 2 1 1 1 1 1 1 1 1768 AAT/ATT 33 6 2 4 45 ACC/GGT 146 56 21 8 4 2 237 ACG/CTG 59 15 2 76 ACT/ATG 236 119 39 28 10 9 6 5 2 2 2 2 1 1 1 463 AGC/CGT 89 27 1 3 1 121 AGG/CCT 224 90 31 11 5 361 AGT/ATC 174 89 30 14 5 1 5 4 1 323 CCG/CGG 30 3 33 AAAC/GTTT 7 2 9 AAAG/CTTT 5 3 8 AAAT/ATTT 1 1 AAGT/ATTC 1 1 AATC/AGTT 1 1 ACAT/ATGT 1 2 3 ACGG/CCTG 1 1 ACTC/AGTG 1 1 AGAT/ATCT 3 3 AAAAC/GTTTT 2 2 AACTT/AATTG 1 1 AAGAG/CTCTT 2 1 3 AAAACC/GGTTTT 1 1 AAACTC/AGTTTG 1 1 AAAGAG/CTCTTT 1 1 AACAAG/CTTGTT 1 1 2 AACACT/ATTGTG 1 1 AACCGG/CCTTGG 1 1 AACTAC/ATGTTG 1 1 AAGACG/CTGCTT 1 1 AAGATG/ACTTCT 1 1 AAGCAG/CGTCTT 1 1 AAGGAG/CCTCTT 1 2 3 AAGTAG/ATCTTC 1 1 AATGGC/ACCGTT 1 1 ACCACT/ATGGTG 2 2 ACCATC/AGTGGT 1 1 ACCTCC/AGGTGG 1 1 ACCTCT/AGATGG 1 1 ACCTGC/ACGTGG 1 1 ACGGAT/ATGCCT 1 1 ACGGTC/AGTGCC 1 1 ACTCCG/AGGCTG 1 1 2 ACTCGG/AGCCTG 2 2 ACTCTG/ACTGAG 1 1 AGAGGC/CCGTCT 1 1 AGAGGT/ATCTCC 1 1 AGAGTC/AGTCTC 1 1 AGCCGG/CCTCGG 1 1 AGGGGT/ATCCCC 1 1