Specifications ============== Sequence source file: "BVGI.021505" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 13618 Total size of examined sequences (bp): 8011081 Total number of identified SSRs: 1048 Number of SSR containing sequences: 922 Number of sequences containing more than 1 SSR: 111 Number of SSRs present in compound formation: 70 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 1 2 463 3 523 4 13 5 14 6 34 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC - 10 4 3 1 18 AG - 26 14 3 4 1 2 1 1 1 2 55 AT - 16 5 3 1 1 1 1 1 29 CA - 4 4 1 1 10 CG - 1 1 CT - 48 31 9 4 6 3 1 2 3 1 1 1 3 113 GA - 21 8 2 1 3 1 2 1 2 1 1 1 44 GC - 1 1 2 GT - 4 2 2 1 9 TA - 12 8 2 3 25 TC - 84 37 12 4 5 2 2 1 2 1 1 1 152 TG - 3 1 1 5 AAC 13 7 6 3 2 2 1 34 AAG 7 4 1 12 AAT 5 1 1 2 9 ACA 7 7 2 2 3 1 1 23 ACC 3 3 1 7 ACG 1 1 ACT 1 1 2 AGA 10 10 AGC 4 1 5 AGG 4 4 AGT 1 1 ATA 6 2 1 9 ATC 11 5 4 3 23 ATG 9 1 1 1 12 ATT 6 1 7 CAA 30 6 5 5 5 2 53 CAC 4 2 3 2 11 CAG 7 4 1 1 13 CAT 9 5 3 1 18 CCA 8 4 6 1 2 21 CCG 5 1 6 CCT 4 1 1 6 CGA 2 1 3 CGC 2 2 CGT 2 2 CTA 2 2 4 CTC 2 1 1 4 CTG 2 1 3 CTT 11 2 2 15 GAA 11 2 1 1 15 GAC 1 1 GAG 1 2 3 GAT 19 5 1 25 GCA 3 1 4 GCC 1 1 2 GCG 1 1 GCT 5 1 1 7 GGA 2 2 4 GGT 4 1 2 1 8 GTA 1 1 GTC 1 1 GTG 3 1 4 TAA 5 4 2 1 12 TAC 3 1 4 TAG 5 5 TAT 3 1 4 TCA 11 6 2 1 20 TCC 3 3 TCT 16 4 1 1 22 TGA 13 8 4 25 TGC 4 1 5 TGG 6 2 2 1 11 TGT 1 1 TTC 11 1 1 13 TTG 1 1 2 AAAG 1 1 AATC 1 1 AATT 1 1 GATT 1 1 GTGA 1 1 GTTT 1 1 TCTT 2 2 TTCT 1 1 TTGA 1 1 TTTC 1 1 TTTG 1 1 2 AAACA 1 1 AAGAG 1 1 AATTA 1 1 AGAAA 1 1 CATCT 1 1 CTAAA 1 1 CTCTC 1 1 CTCTT 1 1 TAAAC 2 1 1 4 TCTCA 1 1 TTCTC 1 1 AAAAAT 1 1 AAAATC 1 1 AACCCT 3 3 AATGAT 1 1 ACACAG 1 1 ACAGCC 1 1 ACCCTC 1 1 ACCTCA 1 1 AGGTGG 1 1 ATCAAG 1 1 ATCTTC 1 1 CAAAAT 1 1 CAAACC 1 1 CAATCA 1 1 CAGCAT 1 1 CATCTT 1 1 CCACAA 1 1 2 CCCAAA 1 1 CCCAAG 1 1 CCTCAA 1 1 CGCCCA 1 1 CGGTGC 1 1 CTTACA 1 1 CTTCAT 1 1 GAAAGA 1 1 GATAGA 1 1 GCCCAA 1 1 TCAAAA 1 1 TCTCTT 1 1 TGATGG 1 1 TGCTGG 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 21 11 7 1 1 1 42 AG/CT - 179 90 26 13 15 6 5 4 7 3 5 2 1 1 3 1 1 2 364 AT/AT - 28 13 5 4 1 1 1 1 54 CG/CG - 2 1 3 AAC/GTT 51 21 13 11 10 3 4 113 AAG/CTT 66 13 5 1 1 1 87 AAT/ATT 25 7 5 3 1 41 ACC/GGT 28 13 14 2 3 2 62 ACG/CTG 15 2 3 20 ACT/ATG 46 18 5 1 2 72 AGC/CGT 17 5 1 1 1 25 AGG/CCT 14 7 1 1 1 24 AGT/ATC 37 17 9 3 1 1 68 CCG/CGG 8 1 1 1 11 AAAC/GTTT 1 1 1 3 AAAG/CTTT 4 1 5 AACT/ATTG 1 1 2 AATC/AGTT 1 1 AATT/AATT 1 1 ACTC/AGTG 1 1 AAAAC/GTTTT 1 1 AAAAG/CTTTT 1 1 AAACT/ATTTG 1 2 1 1 5 AAATT/AATTT 1 1 AAGAG/CTCTT 1 2 3 AGAGG/CCTCT 1 1 AGAGT/ATCTC 1 1 2 AAAAAT/ATTTTT 1 1 AAAATC/AGTTTT 2 1 3 AAACCC/GGGTTT 2 2 AAAGAG/CTCTTT 2 2 AACCAC/GGTGTT 1 1 2 AACCCT/ATTGGG 3 3 AACCTC/AGTTGG 2 2 AAGATC/AGTTCT 1 1 AAGCCC/CGGGTT 2 2 AAGTAG/ATCTTC 2 1 3 AATCAC/AGTGTT 1 1 AATGAT/ACTATT 1 1 AATGTG/ACACTT 1 1 ACACAG/CTGTGT 1 1 ACAGCC/CGGTGT 1 1 ACCACG/CTGGTG 1 1 ACCACT/ATGGTG 1 1 ACCCTC/AGTGGG 1 1 ACCTCC/AGGTGG 1 1 ACGCCC/CGGGTG 1 1 ACGGCC/CCGGTG 1 1 AGAGAT/ATCTCT 1 1 AGCATC/AGTCGT 1 1