Specifications ============== Sequence source file: "CHLRE_TIGR_TC.fas" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 31608 Total size of examined sequences (bp): 23802109 Total number of identified SSRs: 2975 Number of SSR containing sequences: 2356 Number of sequences containing more than 1 SSR: 439 Number of SSRs present in compound formation: 375 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 1647 3 1229 4 69 5 10 6 20 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 total AC - 68 26 21 16 5 7 9 4 1 3 5 3 2 4 1 3 1 3 3 1 2 1 1 1 1 1 1 194 AG - 133 50 12 6 7 2 1 1 1 1 1 1 2 218 AT - 19 5 3 1 2 1 1 1 1 1 35 CA - 82 29 16 19 10 3 6 3 6 2 8 1 6 1 2 3 2 2 1 1 2 1 1 1 2 1 1 1 213 CG - 69 13 3 8 3 96 CT - 14 3 2 1 1 1 1 1 1 25 GA - 136 44 33 18 5 5 3 3 2 1 1 1 1 1 1 2 1 1 2 261 GC - 71 14 2 1 1 1 1 91 GT - 52 20 21 6 5 8 8 4 5 3 2 4 2 4 1 3 2 1 2 1 2 5 2 1 2 2 1 1 1 171 TA - 22 13 5 5 8 2 1 1 1 2 4 1 1 1 4 1 1 1 1 1 1 77 TC - 11 4 1 1 4 2 1 1 1 1 27 TG - 61 32 22 15 6 11 12 11 6 3 5 3 4 3 4 5 2 2 3 3 4 2 3 3 6 3 2 1 1 1 239 AAC 1 1 AAG 9 1 10 ACA 2 1 1 4 ACC 7 2 1 1 11 AGA 7 1 8 AGC 37 16 3 6 7 1 1 1 2 1 75 AGG 10 3 1 2 16 ATA 1 1 ATG 1 1 ATT 1 1 CAA 3 3 1 1 8 CAC 18 1 4 1 24 CAG 55 29 11 8 6 6 2 2 1 1 2 1 1 125 CAT 2 1 1 1 1 6 CCA 11 10 2 23 CCG 36 8 2 46 CCT 5 3 1 9 CGA 2 1 3 CGC 43 15 2 2 2 1 1 66 CGG 50 20 7 1 1 79 CGT 1 1 2 CTA 1 1 CTC 9 1 1 11 CTG 21 9 6 1 1 38 CTT 2 1 3 GAA 2 3 5 GAC 3 3 GAG 8 2 1 11 GAT 1 1 GCA 79 28 13 7 7 7 1 1 3 1 1 1 149 GCC 65 21 2 2 1 91 GCG 53 24 6 2 2 87 GCT 40 5 5 6 1 1 1 1 60 GGA 6 4 10 GGC 90 37 18 12 3 2 162 GGT 6 1 1 1 9 GTA 1 1 GTC 1 1 GTG 6 3 9 GTT 1 1 TAA 1 1 TAT 1 1 TCA 1 1 2 TCC 5 3 1 9 TCG 2 2 TCT 2 2 TGA 1 1 1 3 TGC 11 2 1 1 1 16 TGG 9 1 3 13 TGT 3 1 4 TTA 1 1 TTG 2 1 3 ACGT 2 2 AGCG 1 1 AGCT 1 1 AGGC 1 1 2 AGGG 1 1 CACG 3 2 5 CATC 1 1 CCAG 1 1 CCCG 1 1 CCCT 1 1 CCGC 1 1 CCTG 2 2 CGCC 1 1 2 CGTG 1 1 1 3 CTCC 1 1 CTGC 1 1 1 3 CTGG 2 2 CTGT 1 1 2 GACC 2 2 GAGG 2 2 4 GCAA 1 1 GCAC 4 1 5 GCAG 3 1 4 GCAT 3 3 GCCA 1 1 GCGG 1 1 2 GGAG 2 2 GGGA 1 1 2 GGGC 1 1 TCGG 1 1 TGCA 1 1 2 TGCC 1 1 1 3 TGCG 2 1 3 TTCA 1 1 ACACA 1 1 CACCA 1 1 CCCCG 1 1 CCTGA 1 1 GACCT 1 1 GCTGT 1 1 GGCAG 1 1 TGTGC 3 3 CACACG 1 1 CACATG 1 1 CAGCAC 2 2 CCGATG 1 1 CGAACA 1 1 CGAACC 1 1 CGCTCC 1 1 CGCTGC 1 1 CGGCAC 1 1 CTGGTG 1 1 GAACCC 1 1 GCGACG 1 1 GCTGCG 1 1 GGCCAG 1 1 GGGCAT 1 1 GTGTGC 1 1 GTTTCC 1 1 TGCGTG 1 1 TGTGCG 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 total AC/GT - 263 107 80 56 26 29 35 22 18 11 20 11 14 12 8 11 8 5 8 7 3 6 2 4 10 6 11 6 5 2 1 1 2 1 2 1 1 1 1 817 AG/CT - 294 101 46 27 17 10 5 5 4 2 1 1 1 1 1 2 2 2 1 1 2 1 1 2 1 531 AT/AT - 41 18 5 5 11 2 2 1 1 4 5 2 1 1 4 1 1 1 1 1 1 1 1 1 112 CG/CG - 140 27 5 9 4 1 1 187 AAC/GTT 10 6 1 1 1 1 1 21 AAG/CTT 22 4 1 1 28 AAT/ATT 3 1 1 5 ACC/GGT 57 18 10 2 1 1 89 ACG/CTG 77 17 12 8 2 1 1 1 1 120 ACT/ATG 3 1 1 1 6 AGC/CGT 175 73 28 21 20 13 2 2 2 2 3 1 2 1 1 1 1 2 1 2 1 354 AGG/CCT 43 16 3 4 66 AGT/ATC 4 2 1 1 1 9 CCG/CGG 337 125 37 19 9 2 1 1 531 AAGC/CGTT 1 1 AAGT/ATTC 1 1 ACAG/CTGT 1 1 2 ACCG/CTGG 4 4 ACGC/CGTG 10 4 1 1 16 ACGG/CCTG 4 1 1 1 1 8 ACGT/ATGC 2 3 1 1 7 AGCC/CGGT 1 1 1 3 AGCG/CGCT 1 1 AGCT/ATCG 1 1 AGGC/CCGT 4 1 1 6 AGGG/CCCT 8 2 1 11 AGGT/ATCC 1 1 CCCG/CGGG 5 2 7 AACAC/GTGTT 1 1 ACACC/GGTGT 1 1 ACACG/CTGTG 4 4 ACCTG/ACTGG 1 1 2 AGGGC/CCCGT 1 1 CCCCG/CGGGG 1 1 AAAGGC/CCGTTT 1 1 AACACG/CTTGTG 1 1 AACCCG/CTTGGG 1 1 2 ACACGC/CGTGTG 1 1 1 1 4 ACATGC/ACGTGT 1 1 ACCACG/CTGGTG 1 1 ACCAGC/CGTGGT 2 2 ACCCGT/ATGGGC 1 1 ACCGGC/CCGTGG 1 1 ACGCCG/CGGCTG 1 1 ACGGCG/CCGCTG 1 1 2 ACGGCT/ATGCCG 1 1 AGGGCC/CCCGGT 1 1 AGGGCG/CCCGCT 1 1