Specifications ============== Sequence source file: "GinkoA.neu.fasta" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 3820 Total size of examined sequences (bp): 2152429 Total number of identified SSRs: 138 Number of SSR containing sequences: 123 Number of sequences containing more than 1 SSR: 14 Number of SSRs present in compound formation: 10 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 3 2 97 3 34 4 2 6 2 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 total T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC - 1 1 1 1 4 AG - 2 1 3 AT - 8 3 3 4 2 5 2 2 2 1 1 1 34 CA - 1 1 2 CT - 5 1 1 1 1 9 GA - 1 1 1 3 GT - 1 1 1 3 TA - 3 6 1 7 1 1 1 1 1 22 TC - 3 5 2 1 1 1 13 TG - 1 1 2 4 AAG 1 1 1 1 4 AGA 1 1 AGC 1 1 ATA 1 1 1 3 ATC 1 1 ATG 1 1 CAA 1 1 2 CAC 1 1 CAG 1 1 CAT 1 1 CCA 2 2 CTC 2 2 GAA 1 1 GAT 1 1 TAA 1 1 TAT 1 1 2 TCA 1 1 TCC 1 1 TGA 1 1 TGG 1 1 2 TTA 2 1 3 TTC 1 1 AAAT 1 1 GTAT 1 1 AGTGAT 1 1 GGAGTG 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC/GT - 1 1 3 3 1 2 1 1 13 AG/CT - 10 8 3 3 1 1 1 1 28 AT/AT - 11 9 4 11 3 6 2 3 1 2 1 1 1 1 56 AAC/GTT 1 1 2 AAG/CTT 4 1 1 1 7 AAT/ATT 4 2 2 1 9 ACC/GGT 4 1 5 ACT/ATG 2 1 3 AGC/CGT 2 2 AGG/CCT 3 3 AGT/ATC 2 1 3 AAAT/ATTT 1 1 ACAT/ATGT 1 1 ACCCTC/AGTGGG 1 1 ACTATC/AGTGAT 1 1