Specifications ============== Sequence source file: "CGI.100404" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 40348 Total size of examined sequences (bp): 31581061 Total number of identified SSRs: 2720 Number of SSR containing sequences: 2439 Number of sequences containing more than 1 SSR: 234 Number of SSRs present in compound formation: 146 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 9 2 1268 3 1273 4 89 5 32 6 49 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 2 1 1 6 C - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 2 AC - 18 11 4 5 6 1 1 1 47 AG - 32 24 6 1 4 5 1 1 3 1 1 2 1 2 1 2 87 AT - 104 60 33 31 28 18 12 10 11 11 9 5 3 3 1 1 1 341 CA - 14 3 10 2 1 1 31 CG - 14 4 3 1 22 CT - 47 18 8 10 7 1 4 5 2 1 2 1 106 GA - 33 13 15 9 2 4 2 2 1 1 1 1 1 1 1 1 88 GC - 9 2 1 12 GT - 11 4 1 4 1 21 TA - 117 56 42 30 21 5 9 7 7 4 3 2 3 1 2 2 311 TC - 56 29 19 14 11 6 3 5 2 3 3 2 1 1 1 156 TG - 23 9 2 3 4 3 1 1 46 AAC 8 5 1 14 AAG 33 14 6 4 1 1 2 61 AAT 9 10 3 2 1 1 1 1 1 1 30 ACA 10 2 3 1 16 ACC 12 9 1 1 23 ACT 1 1 1 1 4 AGA 22 10 4 1 1 38 AGC 5 3 3 1 12 AGG 4 1 1 6 AGT 1 1 1 2 5 ATA 8 4 2 2 1 2 1 1 1 22 ATC 13 7 1 4 1 1 27 ATG 11 2 2 1 2 1 1 20 ATT 17 4 2 1 1 3 1 1 1 1 32 CAA 24 9 6 4 43 CAC 21 9 5 1 1 37 CAG 22 11 10 3 1 1 48 CAT 23 14 5 1 2 45 CCA 19 5 3 2 2 1 32 CCG 7 1 1 1 10 CCT 10 2 12 CGA 1 1 2 CGC 6 1 7 CGG 6 1 2 1 10 CGT 1 2 3 CTA 3 1 4 CTC 9 1 1 11 CTG 5 6 11 CTT 26 15 7 4 1 2 1 56 GAA 22 14 6 3 4 3 1 1 54 GAC 7 5 2 1 15 GAG 7 7 1 15 GAT 22 16 6 4 1 1 50 GCA 13 3 1 4 1 22 GCC 5 3 8 GCG 6 2 8 GCT 15 2 2 1 20 GGA 4 1 1 6 GGC 6 5 1 12 GGT 5 4 2 11 GTA 2 2 GTG 6 5 1 1 1 14 GTT 3 1 1 5 TAA 10 5 2 1 1 19 TAC 1 2 1 4 TAG 1 1 TAT 3 4 1 1 1 10 TCA 26 22 6 3 2 3 1 1 64 TCC 13 3 16 TCG 1 1 TCT 24 7 8 3 3 1 1 1 1 1 50 TGA 25 4 6 2 1 38 TGC 8 5 1 14 TGG 16 3 2 1 22 TGT 2 1 2 5 TTA 15 13 4 1 2 1 2 3 1 1 1 1 45 TTC 31 20 15 4 2 4 2 1 2 1 82 TTG 11 8 19 AAAC 2 2 AAAG 1 1 2 AAAT 3 3 AACC 1 1 AATA 2 2 AATT 1 1 2 ACAA 1 1 ACAG 1 1 ACAT 1 1 2 AGAA 1 1 AGCC 2 2 ATAC 2 1 1 2 6 ATAG 1 1 ATCT 1 1 ATGA 1 1 ATGC 2 2 ATGG 1 1 ATGT 1 1 ATTA 1 1 2 ATTC 1 1 2 ATTG 1 1 ATTT 2 2 CAAA 1 1 CAAT 1 1 CATG 1 1 CCTT 1 1 CTCC 1 1 CTGT 1 1 CTTC 1 1 CTTT 1 1 GAAA 1 1 GAGG 1 1 GTAT 1 1 GTTG 1 1 TAAA 1 1 TAAT 1 1 TATC 1 1 TATG 4 1 1 6 TCAA 1 1 TCCA 1 1 2 TCTT 1 1 TGTA 1 1 1 1 1 5 TGTT 1 1 TTAA 1 2 3 TTCT 1 1 2 TTGT 1 1 TTTA 9 9 TTTC 3 3 TTTG 1 1 AAACC 1 1 AAAGC 1 1 AACAA 1 1 AAGAA 1 1 AATAA 1 1 AGAAA 1 1 AGAAG 1 1 AGAGA 1 1 AGTAT 1 1 ATATT 1 1 ATGCT 1 1 ATTGT 1 1 CAAAC 1 1 CATAC 1 1 CTCAA 1 1 CTTCT 1 1 GAAAA 1 1 GAAGA 1 1 GACCA 1 1 GCCAT 1 1 GTTGA 1 1 GTTTG 1 1 TCCCC 1 1 TCTAA 1 1 TCTCT 1 1 TCTTT 1 1 TTCTC 1 1 TTCTT 1 1 TTTAT 1 1 TTTCT 1 1 TTTTA 1 1 TTTTC 1 1 AAAAAG 1 1 AAAAAT 1 1 AAAATA 1 1 2 AACCTC 1 1 AAGATG 1 1 AATGAG 1 1 ACCAAA 1 1 ATACAT 1 1 ATGCCC 1 1 ATTTTG 1 1 CAATGG 1 1 CAGCTG 1 1 CAGGCA 1 1 CAGGCT 1 1 CATTGC 1 1 CCACAG 1 1 CCATTG 1 1 CCCTAA 2 2 CCCTTT 2 2 CCTCTC 2 2 CCTTCA 1 1 CTCGGT 1 1 CTCTCC 1 1 CTTTGC 1 1 GAGACC 1 1 GAGCGG 1 1 GAGTTG 1 1 GATAGG 1 1 GCCTCC 1 1 GGAGCC 1 1 GGCTTC 1 1 TATATC 1 1 TCAAAA 1 1 TCAAGC 1 1 TCCTCT 1 1 TCTCAC 1 1 TCTTCG 1 1 TGAGGA 1 1 TGGAAA 1 1 TGGCTG 1 1 TGGGAA 1 1 TGGGGT 1 1 TGGTGA 1 1 TTCTTG 1 1 TTTATT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 2 2 1 1 1 8 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 66 27 17 14 11 5 1 2 1 1 145 AG/CT - 168 84 48 34 24 16 8 13 9 5 5 4 4 1 2 3 1 1 1 1 1 2 1 1 437 AT/AT - 221 116 75 61 49 23 21 17 18 15 12 7 6 4 2 2 1 1 1 652 CG/CG - 23 6 3 2 34 AAC/GTT 58 26 10 7 1 102 AAG/CTT 158 80 46 19 11 9 5 5 3 2 1 1 1 341 AAT/ATT 62 40 13 8 4 4 4 4 6 2 2 1 4 1 2 1 158 ACC/GGT 79 35 14 4 1 3 2 1 139 ACG/CTG 36 19 5 2 62 ACT/ATG 63 24 16 7 4 3 1 1 1 120 AGC/CGT 42 17 16 8 2 1 86 AGG/CCT 47 13 6 66 AGT/ATC 65 45 12 9 4 2 3 2 2 144 CCG/CGG 36 10 7 1 1 55 AAAC/GTTT 6 1 7 AAAG/CTTT 7 3 1 11 AAAT/ATTT 17 17 AACC/GGTT 1 1 2 AACT/ATTG 1 1 AAGG/CCTT 2 2 AAGT/ATTC 1 1 2 AATC/AGTT 2 2 AATG/ACTT 1 1 AATT/AATT 4 3 1 8 ACAG/CTGT 1 1 2 ACAT/ATGT 7 3 1 1 3 2 1 2 1 21 ACCT/ATGG 1 1 ACGT/ATGC 2 1 3 AGAT/ATCT 2 1 3 AGCC/CGGT 2 2 AGGG/CCCT 1 1 2 AGGT/ATCC 1 1 2 AAAAC/GTTTT 1 1 AAAAG/CTTTT 7 7 AAAAT/ATTTT 2 1 3 AAACC/GGTTT 3 3 AAAGC/CGTTT 1 1 AACAT/ATTGT 1 1 AACTC/AGTTG 2 2 AAGAG/CTCTT 4 1 1 6 AATAT/ATATT 1 1 AATCT/AGATT 1 1 ACCAG/CTGGT 1 1 ACCAT/ATGGT 1 1 ACGAT/ATGCT 1 1 ACGGT/ATGCC 1 1 AGGGG/CCCCT 1 1 AGTAT/ATATC 1 1 AAAAAG/CTTTTT 1 1 AAAAAT/ATTTTT 2 1 1 4 AAAACC/GGTTTT 1 1 AAAACT/ATTTTG 1 1 AAAATC/AGTTTT 1 1 AAACGG/CCTTTG 1 1 AAAGGG/CCCTTT 2 2 AAATGG/ACCTTT 1 1 AACAAG/CTTGTT 1 1 AACCCC/GGGGTT 1 1 AACCCT/ATTGGG 2 2 AACCTC/AGTTGG 2 2 AACGGT/ATTGCC 2 2 AAGATG/ACTTCT 1 1 AAGCAG/CGTCTT 1 1 AAGCCG/CGGCTT 1 1 AAGCTC/AGTTCG 1 1 AAGGAG/CCTCTT 1 1 AAGTGG/ACCTTC 1 1 AATGAG/ACTCTT 1 1 AATGGC/ACCGTT 1 1 AATGGG/ACCCTT 1 1 ACACCG/CTGTGG 1 1 ACAGCC/CGGTGT 1 1 ACAGGC/CCGTGT 1 1 ACATAT/ATATGT 1 1 ACCACT/ATGGTG 1 1 ACCGAG/CTCTGG 1 1 ACGGGT/ATGCCC 1 1 ACGTCG/AGCTGC 1 1 ACTCCT/AGGATG 1 1 ACTCTC/AGAGTG 1 1 AGAGCC/CGGTCT 1 1 AGAGGG/CCCTCT 3 3 AGATAT/ATATCT 1 1 AGCCGG/CCTCGG 1 1 AGCGGG/CCCTCG 1 1 AGGCGG/CCGCCT 1 1 AGGCTC/AGTCCG 1 1 AGGGAT/ATCCCT 1 1