Specifications ============== Sequence source file: "HAGI.091603" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 20520 Total size of examined sequences (bp): 9811686 Total number of identified SSRs: 1263 Number of SSR containing sequences: 1087 Number of sequences containing more than 1 SSR: 137 Number of SSRs present in compound formation: 126 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 507 3 689 4 52 5 5 6 10 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 total AC - 17 9 4 2 1 2 1 1 37 AG - 26 12 10 13 3 2 3 4 2 1 1 77 AT - 29 3 7 4 2 3 6 1 55 CA - 5 2 2 2 1 1 1 14 CT - 28 8 7 4 8 2 1 3 2 1 1 1 1 1 68 GA - 27 16 7 6 2 3 3 2 4 3 1 1 1 76 GC - 1 1 2 GT - 9 3 3 2 17 TA - 20 8 2 4 1 2 1 2 1 1 42 TC - 26 21 6 9 2 6 1 2 1 1 1 2 1 79 TG - 14 12 5 2 6 1 40 AAC 4 5 1 10 AAG 12 2 2 2 1 1 20 AAT 7 5 1 13 ACA 3 3 ACC 15 2 1 1 19 ACG 1 1 ACT 1 1 2 AGA 11 2 1 1 1 16 AGC 5 3 2 10 AGG 1 1 AGT 1 1 ATA 7 7 3 1 18 ATC 12 2 3 1 1 19 ATG 12 6 3 1 22 ATT 10 3 6 1 20 CAA 3 2 2 2 9 CAC 31 7 4 1 43 CAG 16 3 2 21 CAT 7 4 2 1 1 15 CCA 20 5 2 27 CCG 2 1 3 CCT 3 1 4 CGA 1 1 CGG 19 1 20 CTA 2 2 CTC 4 1 5 CTG 3 6 2 11 CTT 5 1 6 GAA 22 6 1 1 1 1 32 GAG 7 2 9 GAT 17 5 2 1 25 GCA 11 4 2 2 19 GCG 3 3 GCT 7 5 1 13 GGA 6 1 1 8 GGC 2 2 4 GGT 40 6 2 48 GTA 2 2 GTG 21 1 22 GTT 3 1 4 TAA 6 1 1 8 TAC 1 1 2 TAG 3 3 TAT 13 3 1 17 TCA 6 2 1 9 TCC 2 2 TCT 6 4 3 1 1 15 TGA 14 3 3 1 1 22 TGC 4 1 2 7 TGG 23 4 2 29 TGT 5 4 9 TTA 6 5 2 1 14 TTC 7 5 3 1 16 TTG 1 3 1 5 AAAC 1 1 AAAG 1 1 AAAT 2 2 AACA 1 1 AAGA 1 1 AATA 2 2 ACAA 1 1 AGAA 1 1 2 AGCA 2 2 AGGC 1 1 ATAA 1 1 ATAG 1 1 ATCT 1 1 ATGT 1 1 ATTC 1 1 CATA 1 1 CGAC 1 1 GAAA 1 1 GATT 1 1 2 GTTT 2 2 TAAA 1 1 TAAT 1 1 TAGA 1 1 TATC 1 1 TATG 1 1 1 3 TATT 1 1 TGTA 1 1 TGTT 2 2 TTAA 1 1 TTAT 1 1 TTGC 1 1 TTGT 5 5 TTTA 3 1 4 TTTC 1 1 TTTG 1 1 2 AACAA 1 1 ATTAC 1 1 GGTTT 1 1 TTTGC 1 1 TTTTC 1 1 ATAAAT 1 1 ATGAAT 1 1 CCCATT 1 1 GAGGAT 1 1 GGAATG 1 1 GGTGAC 1 1 GGTTCA 2 2 TATGAT 1 1 TTGTGT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 total AC/GT - 45 26 14 6 8 1 1 2 1 1 2 1 108 AG/CT - 107 57 30 32 15 13 5 10 11 2 3 6 3 1 1 1 1 2 300 AT/AT - 49 11 9 4 6 4 8 1 3 1 1 97 CG/CG - 1 1 2 AAC/GTT 19 14 4 3 40 AAG/CTT 63 20 10 2 5 1 1 1 1 1 105 AAT/ATT 49 24 13 1 2 1 90 ACC/GGT 150 25 11 2 188 ACG/CTG 15 13 5 33 ACT/ATG 44 17 6 1 5 1 1 75 AGC/CGT 32 10 6 2 50 AGG/CCT 23 3 2 1 29 AGT/ATC 31 8 5 2 2 1 49 CCG/CGG 26 3 1 30 AAAC/GTTT 13 1 14 AAAG/CTTT 4 1 1 6 AAAT/ATTT 9 2 1 12 AACG/CTTG 1 1 AACT/ATTG 1 1 2 AAGC/CGTT 2 2 AAGT/ATTC 1 1 AATT/AATT 2 2 ACAT/ATGT 3 2 1 6 ACCG/CTGG 1 1 AGAT/ATCT 3 1 4 AGGC/CCGT 1 1 AAAAC/GTTTT 1 1 AAAAG/CTTTT 1 1 AAACC/GGTTT 1 1 AAACG/CTTTG 1 1 AATGT/ACATT 1 1 AAACAC/GTGTTT 1 1 AAATAT/ATATTT 1 1 AAGGGT/ATTCCC 1 1 AAGTCC/AGGTTC 2 2 AATACT/ATGATT 1 1 AATATG/ACTTAT 1 1 AATGGG/ACCCTT 1 1 ACGGTG/ACTGCC 1 1 ACTCCT/AGGATG 1 1