Specifications ============== Sequence source file: "MTGI.012605" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 36878 Total size of examined sequences (bp): 28175361 Total number of identified SSRs: 3190 Number of SSR containing sequences: 2779 Number of sequences containing more than 1 SSR: 346 Number of SSRs present in compound formation: 222 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 4 2 1156 3 1860 4 94 5 39 6 37 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC - 22 6 9 5 2 1 1 1 47 AG - 39 22 12 16 6 7 4 1 1 1 2 1 1 2 1 1 117 AT - 62 37 16 13 7 6 2 6 4 1 3 3 2 3 1 5 1 1 1 1 1 1 177 CA - 21 8 4 2 1 1 1 38 CG - 11 11 CT - 50 24 20 18 22 12 6 4 3 6 2 5 3 2 2 3 1 1 1 1 186 GA - 18 12 10 8 4 1 2 5 2 5 3 1 2 1 1 1 1 1 4 1 3 1 2 2 1 1 1 1 1 3 3 2 1 1 2 2 2 1 1 114 GC - 6 5 1 1 13 GT - 12 1 5 2 3 1 24 TA - 65 18 15 11 7 9 4 3 1 2 2 2 3 2 1 2 1 2 1 1 1 1 154 TC - 54 43 40 16 18 16 12 5 8 4 3 3 2 4 1 1 1 2 1 1 1 1 1 1 1 1 241 TG - 10 9 6 3 2 1 1 2 34 AAC 31 19 11 2 2 2 67 AAG 36 26 13 3 1 3 82 AAT 13 7 6 4 2 1 1 34 ACA 26 11 3 3 2 45 ACC 16 9 6 2 33 ACG 3 3 ACT 4 1 1 6 AGA 35 7 6 2 1 3 54 AGC 11 2 1 14 AGG 6 6 AGT 4 3 1 8 ATA 11 6 3 6 1 1 1 1 1 1 32 ATC 24 18 6 3 2 53 ATG 29 7 5 1 1 1 1 45 ATT 19 6 7 3 1 1 37 CAA 49 26 7 4 1 1 88 CAC 19 4 2 1 26 CAG 13 5 4 1 1 24 CAT 37 11 6 4 58 CCA 18 7 6 1 32 CCG 5 2 7 CCT 12 6 2 20 CGA 4 2 6 CGG 1 1 2 CGT 2 1 3 CTA 6 1 1 8 CTC 10 8 2 20 CTG 10 3 4 17 CTT 55 26 12 8 9 1 2 2 115 GAA 49 17 13 12 3 2 5 1 1 103 GAC 5 1 1 7 GAG 6 6 2 14 GAT 28 9 2 2 1 1 43 GCA 16 7 23 GCC 1 1 2 GCT 7 1 1 1 10 GGA 8 5 1 14 GGC 2 2 GGT 14 8 3 2 27 GTA 6 1 1 1 9 GTC 1 1 GTG 12 4 3 19 GTT 8 6 1 15 TAA 14 7 1 1 23 TAC 20 5 2 27 TAG 3 1 4 TAT 22 8 4 3 1 1 1 40 TCA 38 12 5 1 3 2 61 TCC 8 9 2 2 1 22 TCG 2 2 TCT 39 37 16 9 5 2 3 1 112 TGA 28 6 4 2 1 41 TGC 12 8 1 3 24 TGG 17 4 2 2 25 TGT 5 2 7 TTA 17 8 6 4 3 1 1 40 TTC 82 46 22 14 9 6 5 1 2 1 1 189 TTG 8 1 9 AAAC 2 2 AAAG 1 1 AAAT 2 2 AAGA 3 3 AAGG 1 1 AATC 1 1 2 AATT 1 1 ACAT 1 1 ACTC 2 2 AGAA 1 1 2 AGAT 1 1 AGTG 1 1 ATAA 2 2 ATAC 1 1 ATCT 1 1 ATGT 1 1 ATTA 1 1 ATTG 1 1 ATTT 1 1 CACT 1 1 CATA 2 2 CATT 1 1 CCGT 1 1 CCTT 1 1 CGAT 1 1 CTAG 1 1 CTAT 1 1 CTCA 2 2 GAAA 3 1 1 5 GACA 1 1 GAGG 1 1 GATG 1 1 GATT 1 1 GCAT 1 1 GTAT 1 1 GTTT 1 1 TAAC 2 2 TACT 1 1 TAGA 1 1 TAGC 1 1 TATC 1 1 1 3 TATG 1 1 TATT 1 1 2 TCAA 1 1 TCAT 2 2 TCCA 1 1 TCTA 1 1 2 TCTT 1 1 2 TGAG 1 1 TGTC 1 1 TGTT 1 1 TTAA 3 1 4 TTAT 1 1 2 TTCA 2 2 TTCT 3 1 4 TTGT 1 1 TTTA 4 4 TTTC 3 1 4 TTTG 1 1 AAACA 1 1 AAGAG 1 1 ACACC 1 1 ACATA 1 1 AGAAG 1 1 ATCCA 1 1 ATGCG 1 1 ATTGA 1 1 CAAAC 2 2 CAACA 2 2 CAACT 1 1 CCACG 1 1 CTTCT 2 2 GAAGA 1 1 GGTTT 2 2 GTTCT 1 1 GTTGT 1 1 TATAT 1 1 2 TCACC 1 1 TCGCA 1 1 TCTCT 2 2 TCTGT 1 1 TCTTT 1 1 TGGAG 1 1 TGTCA 1 1 TTATT 1 1 TTCTC 1 1 2 TTGTA 2 2 TTTAT 1 1 TTTGT 1 1 TTTTG 1 1 ACAAGA 1 1 ACAATA 2 2 ACACAA 1 1 ACATCA 1 1 ACATCC 1 1 ACCATT 1 1 ATATAA 1 1 ATCAAA 1 1 ATCATA 1 1 ATCTCT 1 1 ATGAAC 1 1 ATTCCT 1 1 CAGCCG 1 1 CATTGT 1 1 CTTCAT 1 1 CTTCTG 1 1 GAAGAG 1 1 GAATGG 1 1 GAGAAA 1 1 GGAACT 1 1 GGTGCA 1 1 GTAACA 1 1 GTCATC 1 1 GTTTGT 1 1 TCCAAT 1 1 TCCTTC 1 1 TCTCAA 1 1 TCTTCA 1 1 TGAATC 2 2 TTACAC 1 1 TTCATA 1 1 TTCCAA 1 1 TTCTCT 2 2 TTGAAT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC/GT - 65 24 24 12 5 6 2 2 1 2 143 AG/CT - 161 101 82 58 50 36 24 14 14 15 9 10 7 8 5 5 1 3 1 1 1 2 5 3 1 3 2 2 1 2 1 2 1 1 1 1 1 3 3 2 1 1 2 2 1 2 1 1 1 1 1 1 658 AT/AT - 127 55 31 24 14 15 6 9 5 3 5 5 2 6 1 7 1 2 3 1 3 1 1 1 1 1 1 331 CG/CG - 17 5 1 1 24 AAC/GTT 127 65 22 9 5 2 1 231 AAG/CTT 296 159 82 48 27 15 15 4 3 4 1 1 655 AAT/ATT 96 42 27 20 8 2 1 4 3 1 2 206 ACC/GGT 96 36 22 6 2 162 ACG/CTG 41 10 5 11 67 ACT/ATG 115 27 14 4 2 5 1 1 1 170 AGC/CGT 44 15 5 2 1 67 AGG/CCT 50 34 7 4 1 96 AGT/ATC 109 48 19 9 5 3 193 CCG/CGG 9 3 1 13 AAAC/GTTT 4 1 1 6 AAAG/CTTT 15 4 2 21 AAAT/ATTT 10 2 1 13 AACT/ATTG 2 2 4 AAGG/CCTT 1 1 2 AAGT/ATTC 5 5 AATC/AGTT 1 2 3 AATG/ACTT 1 1 AATT/AATT 5 1 6 ACAG/CTGT 2 2 ACAT/ATGT 5 2 7 ACCT/ATGG 1 1 ACGT/ATGC 1 1 ACTC/AGTG 4 1 1 1 7 AGAT/ATCT 2 5 1 1 9 AGCT/ATCG 3 3 AGGC/CCGT 1 1 AGGG/CCCT 1 1 AGGT/ATCC 1 1 AAAAC/GTTTT 3 3 AAAAG/CTTTT 1 1 AAAAT/ATTTT 2 2 AAACC/GGTTT 4 4 AACAC/GTGTT 3 3 AACAT/ATTGT 3 3 AACTC/AGTTG 1 1 AACTT/AATTG 1 1 AAGAC/CTGTT 2 2 AAGAG/CTCTT 5 3 1 9 AATAT/ATATT 1 1 2 AATCC/AGGTT 1 1 ACACC/GGTGT 1 1 ACAGT/ATGTC 1 1 ACCTC/AGTGG 2 2 ACGCC/CGGTG 1 1 ACGCT/ATGCG 1 1 AGCGT/ATCGC 1 1 AAAATC/AGTTTT 1 1 AAACAC/GTGTTT 2 2 AAACTT/AATTTG 1 1 AAAGAG/CTCTTT 3 3 AAATAT/ATATTT 1 1 AACAAG/CTTGTT 1 1 AACAAT/ATTGTT 2 2 AACAGT/ATTGTC 2 2 AACATC/AGTTGT 1 1 AACATG/ACTTGT 1 1 AACTGG/ACCTTG 1 1 AAGACG/CTGCTT 1 1 AAGAGG/CCTTCT 2 2 AAGGAT/ATTCCT 1 1 AAGGTT/AATTCC 1 1 2 AAGTAG/ATCTTC 1 1 2 AAGTAT/ATATTC 1 1 AATCAT/AGTATT 1 1 AATCTC/AGAGTT 1 1 AATCTG/ACTTAG 2 2 AATGGG/ACCCTT 1 1 AATGGT/ACCATT 1 1 AATGTG/ACACTT 1 1 ACATCC/AGGTGT 1 1 ACGTCC/AGGTGC 1 1 AGAGAT/ATCTCT 1 1 AGCAGT/ATCGTC 1 1 AGCCGC/CGGCGT 1 1