Specifications ============== Sequence source file: "MCGI.051503" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 8455 Total size of examined sequences (bp): 6042657 Total number of identified SSRs: 1444 Number of SSR containing sequences: 1179 Number of sequences containing more than 1 SSR: 203 Number of SSRs present in compound formation: 178 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 921 3 458 4 20 5 12 6 33 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 total AC - 5 2 3 1 11 AG - 33 25 12 9 6 2 2 1 6 2 1 1 1 2 1 1 1 1 1 1 109 AT - 10 5 1 1 1 1 2 1 1 1 24 CA - 4 2 1 7 CG - 2 2 CT - 97 49 33 11 14 7 9 7 8 5 5 9 5 5 2 4 3 1 3 4 2 1 1 2 1 1 1 290 GA - 31 16 12 9 6 2 1 2 2 1 3 1 1 2 1 1 1 1 2 2 1 2 1 3 3 1 1 2 1 1 1 1 2 3 2 1 1 1 1 126 GC - 2 1 1 4 GT - 1 3 1 5 TA - 9 7 2 2 1 1 1 1 1 25 TC - 82 48 40 25 22 21 12 12 9 6 2 4 5 4 2 2 2 3 1 1 2 1 1 1 308 TG - 8 1 1 10 AAC 11 1 3 1 16 AAG 5 1 2 1 9 AAT 1 3 3 7 ACA 5 1 1 1 8 ACC 2 6 1 2 1 12 ACG 1 1 ACT 1 1 AGA 3 2 2 7 AGC 1 2 2 5 AGG 5 1 6 AGT 2 2 ATA 2 4 6 ATC 9 4 3 3 1 20 ATG 4 1 1 1 1 8 ATT 2 1 1 4 CAA 10 13 3 3 3 1 33 CAC 8 2 4 1 2 17 CAG 7 5 1 2 1 16 CAT 4 3 2 2 3 2 16 CCA 11 7 1 1 3 23 CCG 4 1 5 CCT 2 1 3 CGA 1 1 2 CGC 1 1 CGG 1 1 CGT 2 2 CTA 2 1 1 4 CTC 4 2 3 9 CTG 1 2 3 CTT 4 6 2 2 14 GAA 6 5 1 1 13 GAC 2 2 1 5 GAG 2 3 1 6 GAT 6 2 2 1 11 GCA 3 1 1 5 GCC 1 1 GCG 2 1 3 GCT 3 1 4 GGA 4 4 GGC 1 1 GGT 3 2 5 GTG 1 1 2 GTT 1 1 2 TAA 1 1 1 3 TAC 3 1 1 5 TAG 1 1 TAT 3 1 1 5 TCA 10 3 6 19 TCC 1 1 TCG 1 1 TCT 13 7 6 2 1 2 1 1 33 TGA 13 3 4 20 TGC 3 2 1 6 TGG 5 4 1 10 TGT 1 1 2 TTA 1 1 TTC 10 5 6 1 22 TTG 4 1 1 6 AGCC 1 1 ATAA 1 1 ATGT 1 1 ATTG 1 1 CAAA 1 1 CACT 1 1 CATG 1 1 CCCT 1 1 CTTC 2 2 CTTT 1 1 GAAG 1 1 2 TATC 1 1 TATG 1 1 TCTT 1 1 TTAA 2 2 TTAT 1 1 TTCC 1 1 ACCTC 1 1 AGAGA 1 1 AGTAG 1 1 ATTTG 1 1 CCCCT 1 1 CTTTT 1 1 GAATC 1 1 GGAGA 1 1 TCCGA 1 1 TCTCT 1 1 TGATA 1 1 TGTGC 1 1 AAAGAC 1 1 AACACC 1 1 ACAAGG 1 1 ACACCA 1 1 ACCACA 1 1 ACTACA 1 1 AGAAAG 1 1 AGAGAA 1 1 AGAGGA 2 2 ATAACC 1 1 ATCAAA 1 1 ATCCCT 1 1 ATCTCT 1 1 ATCTTC 1 1 ATTACA 1 1 CAACAG 1 1 CATCAA 1 1 CCTGTC 1 1 CTCTCC 1 1 CTGCAA 1 1 CTTCAT 1 1 GCTCCT 1 1 GGGTCA 1 1 TATGTG 1 1 TCATCC 1 1 TCATCT 1 1 2 TCCTTG 1 1 TGCAAA 1 1 TTGAAA 1 1 TTGCTG 1 1 TTTTTC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 total AC/GT - 18 5 5 1 1 2 1 33 AG/CT - 243 138 97 54 48 32 24 22 23 15 8 15 14 10 5 8 7 6 2 4 5 5 3 3 3 1 1 1 4 1 2 3 3 2 1 2 1 2 1 1 2 3 2 1 1 1 1 1 1 833 AT/AT - 19 12 3 3 2 1 1 3 2 1 1 1 49 CG/CG - 2 2 1 1 6 AAC/GTT 31 16 8 6 4 2 67 AAG/CTT 41 26 17 4 4 3 1 1 1 98 AAT/ATT 5 12 6 1 1 1 26 ACC/GGT 30 22 6 5 3 3 69 ACG/CTG 10 3 2 5 1 21 ACT/ATG 28 9 6 3 1 2 49 AGC/CGT 12 7 5 4 1 29 AGG/CCT 18 6 5 29 AGT/ATC 26 10 11 5 3 2 1 58 CCG/CGG 9 2 1 12 AAAC/GTTT 1 1 AAAG/CTTT 1 1 2 AAAT/ATTT 1 1 2 AACT/ATTG 1 1 AAGG/CCTT 1 3 1 5 AATT/AATT 2 2 ACAT/ATGT 2 2 ACGT/ATGC 1 1 ACTC/AGTG 1 1 AGAT/ATCT 1 1 AGCC/CGGT 1 1 AGGG/CCCT 1 1 AAAAG/CTTTT 1 1 AAACT/ATTTG 1 1 AAGAG/CTCTT 2 2 AATCG/AGCTT 1 1 ACACG/CTGTG 1 1 ACCTC/AGTGG 1 1 ACTAT/ATATG 1 1 AGAGG/CCTCT 1 1 AGAGT/ATCTC 1 1 AGGCT/ATCCG 1 1 AGGGG/CCCCT 1 1 AAAAAG/CTTTTT 1 1 AAAATC/AGTTTT 1 1 AAAGAC/CTGTTT 1 1 AAAGAG/CTCTTT 1 1 2 AAATGC/ACGTTT 1 1 AAATTG/AACTTT 1 1 AACACC/GGTTGT 1 1 2 AACAGC/CGTTGT 1 1 AACAGG/CCTTGT 1 1 AACATC/AGTTGT 1 1 AACCAC/GGTGTT 1 1 AACCAT/ATTGGT 1 1 AACGAC/CTGTTG 1 1 AACTAC/ATGTTG 1 1 AACTGC/ACGTTG 1 1 AAGAGG/CCTTCT 2 2 AAGGAC/CCTGTT 1 1 AAGTAG/ATCTTC 2 1 1 4 AATGTT/AATTAC 1 1 ACACAT/ATGTGT 1 1 ACAGGG/CCCTGT 1 1 ACGAGG/CCTGCT 1 1 AGAGAT/ATCTCT 1 1 AGAGGG/CCCTCT 1 1 AGGAGT/ATCCTC 1 1 AGGGAT/ATCCCT 1 1 AGGGTC/AGTCCC 1 1