Specifications ============== Sequence source file: "Mesostigma_viride.PUT.fasta" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 5467 Total size of examined sequences (bp): 3752103 Total number of identified SSRs: 140 Number of SSR containing sequences: 129 Number of sequences containing more than 1 SSR: 7 Number of SSRs present in compound formation: 9 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 16 3 59 4 53 5 11 6 1 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 total AT - 4 4 CA - 1 1 CG - 1 1 GC - 4 4 GT - 1 2 3 TA - 3 3 AAG 15 1 16 AAT 2 2 AGC 1 1 AGG 1 3 4 ATA 1 1 CAG 3 3 CCG 1 1 CGA 1 1 CGG 1 1 2 CTG 2 1 3 CTT 1 2 1 4 GAA 1 1 GAG 7 1 8 GCA 1 1 2 GCG 1 1 GGA 1 1 GGC 1 1 GTT 1 1 TCA 2 2 TGA 1 1 TGC 1 1 TTA 1 1 TTC 1 1 AACC 1 1 AACT 1 1 AAGA 1 1 AAGT 1 1 AATT 4 4 ACAA 1 1 ACTG 1 1 ATGC 1 1 ATTA 7 2 1 10 CAAA 1 1 CAAC 1 2 3 CATG 1 1 CCAA 1 1 GTAT 1 1 TAAT 10 4 1 15 TACT 1 1 TTAA 5 2 1 8 TTGA 1 1 AAATT 1 1 AATTT 1 1 ATTAA 2 2 ATTTA 1 1 CCTGA 1 1 TAATT 3 3 TGACC 1 1 TTTAA 1 1 GCCTCC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 total AC/GT - 2 2 4 AT/AT - 3 4 7 CG/CG - 5 5 AAC/GTT 1 1 AAG/CTT 17 2 1 1 1 22 AAT/ATT 3 1 4 ACG/CTG 3 1 1 5 ACT/ATG 1 1 AGC/CGT 5 1 6 AGG/CCT 9 3 1 13 AGT/ATC 2 2 CCG/CGG 2 2 1 5 AAAC/GTTT 2 2 AAAG/CTTT 1 1 AACC/GGTT 1 1 3 5 AACT/ATTG 1 1 2 AAGT/ATTC 1 1 AATG/ACTT 1 1 AATT/AATT 26 8 2 1 37 ACAT/ATGT 1 1 ACGT/ATGC 2 2 ACTG/ACTG 1 1 AAATT/AATTT 5 4 9 ACCTG/ACTGG 1 1 2 AGGCGG/CCGCCT 1 1