Specifications ============== Sequence source file: "OGI.100604" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 89147 Total size of examined sequences (bp): 93862193 Total number of identified SSRs: 24301 Number of SSR containing sequences: 17435 Number of sequences containing more than 1 SSR: 4737 Number of SSRs present in compound formation: 2704 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 54 2 4713 3 18939 4 384 5 106 6 105 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 4 2 3 4 4 2 3 3 3 2 2 1 3 1 2 1 3 1 1 1 1 1 50 G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 4 AC - 65 35 13 14 3 2 5 5 2 2 1 1 1 1 1 151 AG - 165 107 78 46 36 25 32 21 9 9 5 4 5 1 3 3 3 1 3 1 1 1 1 1 2 1 3 1 1 2 1 1 1 1 1 1 1 1 579 AT - 110 38 30 21 19 11 4 6 7 2 2 1 3 3 3 2 2 2 5 2 2 1 3 1 2 1 1 1 285 CA - 85 30 19 16 4 3 3 3 1 1 1 1 1 1 169 CG - 189 70 21 11 3 2 296 CT - 276 181 115 76 43 43 32 17 16 19 7 17 9 5 6 7 5 3 6 6 2 2 1 1 1 1 1 898 GA - 319 175 119 83 55 33 13 27 10 13 13 9 5 5 3 5 6 4 1 2 4 2 4 1 1 2 1 4 1 3 1 1 1 1 1 2 3 2 1 1 1 1 1 1 1 1 1 944 GC - 209 37 8 1 1 256 GT - 61 28 10 14 3 3 2 2 3 1 1 1 1 130 TA - 95 44 22 16 8 7 7 5 4 2 4 1 6 3 3 2 1 1 1 1 2 2 1 238 TC - 186 114 84 55 34 22 10 13 12 9 8 4 6 8 4 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 587 TG - 91 34 24 8 4 4 3 5 2 1 1 1 1 1 180 AAC 15 3 2 1 2 1 24 AAG 77 31 20 11 5 5 3 1 2 1 3 2 2 2 165 AAT 8 1 2 1 1 13 ACA 15 8 4 1 28 ACC 84 41 21 4 4 1 2 157 ACG 109 35 13 3 1 1 1 163 ACT 3 2 1 1 1 8 AGA 59 23 8 6 12 3 1 1 2 1 1 117 AGC 213 120 39 13 5 1 2 1 394 AGG 143 57 23 21 4 1 1 250 AGT 5 1 3 9 ATA 9 2 2 1 1 1 16 ATC 20 7 7 2 36 ATG 33 12 1 1 1 1 1 50 ATT 15 8 3 1 2 1 30 CAA 33 13 3 3 1 1 1 1 56 CAC 99 62 19 12 2 1 2 1 198 CAG 237 110 52 21 3 5 3 4 1 436 CAT 38 16 6 3 1 64 CCA 201 89 41 10 3 1 1 346 CCG 863 416 181 61 22 8 2 3 1 1557 CCT 310 138 78 20 14 4 2 566 CGA 288 91 34 20 6 1 1 1 1 443 CGC 991 483 224 63 32 5 1 1 1800 CGG 1157 548 240 74 18 6 1 1 2045 CGT 162 56 21 8 3 1 1 252 CTA 6 4 3 13 CTC 290 127 75 13 7 2 1 515 CTG 106 49 23 5 2 2 187 CTT 64 24 11 8 7 5 3 4 1 1 2 2 132 GAA 113 42 16 15 8 2 1 2 1 1 2 2 1 1 2 1 210 GAC 185 81 35 8 4 2 2 317 GAG 319 148 75 36 21 6 4 2 1 612 GAT 84 24 13 5 1 2 1 1 131 GCA 218 115 51 22 7 2 1 1 417 GCC 592 290 106 40 21 3 1052 GCG 1000 483 168 50 25 5 3 1 1735 GCT 140 38 19 4 1 1 203 GGA 348 145 68 21 9 11 1 1 604 GGC 1060 417 154 32 15 3 2 1683 GGT 105 48 22 9 1 3 188 GTA 9 5 3 17 GTC 131 57 25 9 1 223 GTG 52 21 14 4 1 92 GTT 9 3 3 1 16 TAA 8 1 1 10 TAC 15 4 1 20 TAG 4 4 1 1 1 1 12 TAT 9 4 1 1 1 1 17 TCA 18 4 6 1 2 1 32 TCC 160 67 37 9 7 2 1 283 TCG 185 55 28 10 1 1 1 281 TCT 68 34 18 7 3 1 1 1 2 3 2 140 TGA 58 18 8 3 1 1 89 TGC 102 42 12 4 1 161 TGG 80 33 10 5 1 3 132 TGT 12 1 1 14 TTA 8 2 4 1 2 1 1 1 1 1 1 1 24 TTC 83 17 10 2 1 2 2 1 3 2 1 1 1 1 127 TTG 10 12 4 1 27 AAAG 4 1 1 6 AAAT 1 1 2 AACA 1 1 AATA 1 1 AATG 1 1 AATT 1 1 1 3 ACAG 1 1 ACAT 2 2 ACCA 1 1 ACCT 3 3 ACGC 1 1 ACGT 1 1 AGAA 2 1 3 AGAC 2 2 AGCA 1 1 AGCC 5 1 6 AGCG 1 1 AGCT 3 3 AGGA 4 2 1 7 AGGC 1 1 AGGG 2 2 AGTG 3 3 ATAA 1 1 2 ATAC 2 2 4 ATAG 2 1 3 ATCC 1 1 ATCG 4 1 5 ATCT 1 1 1 1 1 5 ATGC 1 1 ATGG 3 3 ATGT 1 1 2 ATTA 11 2 13 ATTC 1 1 ATTT 2 1 3 CAAA 1 1 CAAC 1 1 CAAT 1 1 CACG 2 2 CACT 1 1 CAGG 1 1 CATA 1 1 CATC 4 2 6 CATG 2 2 CATT 1 1 CCAC 1 1 CCAT 2 2 CCCT 4 4 CCGC 3 3 CCGG 1 1 CCGT 1 1 CCTC 3 3 CCTT 1 1 CGAA 1 1 CGAT 8 3 11 CGCA 1 1 CGCC 1 1 CGCT 4 4 CGGA 1 1 CGTA 1 1 CGTC 1 1 CGTG 1 1 2 CTAG 2 2 CTAT 1 1 2 CTCC 1 1 CTCG 4 4 CTGC 4 1 1 6 CTGG 1 1 CTTC 1 2 3 CTTG 1 1 CTTT 2 2 4 GAAG 1 1 2 GACC 1 1 GACT 2 2 GAGG 1 1 GATA 1 1 2 GATC 16 2 18 GATG 3 3 GATT 3 3 GCAA 1 1 GCAC 2 2 GCCA 2 2 GCCG 2 2 GCCT 1 1 GCGA 5 5 GCGT 1 1 GCTA 7 1 8 GGAA 1 1 GGAC 1 1 GGAG 3 1 4 GGAT 3 1 4 GGCA 1 2 3 GGCC 1 1 GGCT 1 1 GGGA 4 1 1 6 GGTA 1 1 GGTC 1 1 GGTT 2 2 GTAC 1 2 3 GTAT 1 1 1 3 GTGA 2 2 GTGC 2 2 4 GTGG 1 1 GTTG 1 1 TAAA 16 16 TAAT 8 3 11 TAGC 2 2 4 TAGG 1 1 TATC 4 2 1 2 1 1 1 12 TATG 3 2 1 6 TATT 1 1 1 3 TCAG 1 1 2 TCCA 3 1 4 TCCC 1 1 TCCT 3 3 TCGA 3 3 TCGC 1 2 3 TCGG 1 1 TCTA 1 1 2 TCTG 1 2 3 TGAG 1 1 TGAT 1 1 2 TGCG 2 2 TGGC 1 1 TGGT 1 1 TGTA 2 2 4 TGTC 1 1 TGTT 1 1 TTAA 6 1 7 TTCC 2 2 TTCT 6 1 1 8 TTGA 1 1 TTGC 1 1 TTGG 1 2 3 TTGT 1 1 TTTA 1 1 TTTC 2 2 TTTG 1 1 2 AAAGC 1 1 AACTG 1 1 AAGAG 1 1 AAGGT 1 1 AATCC 1 1 AGAAG 2 2 AGAGA 1 1 AGAGG 2 2 AGGAG 1 1 2 AGGGG 1 1 ATATA 1 1 ATATT 1 1 ATCGA 1 1 CAAAC 1 1 CAAAG 1 1 CACGA 2 2 CACGC 1 1 CACTC 1 1 CCAAT 2 2 CCACC 1 1 CCCAA 1 1 CCCTC 1 1 CCCTT 1 1 CCGCC 1 1 CCTCC 3 3 CCTCG 1 1 CCTCT 3 3 CCTGC 1 1 CCTTC 1 1 CGAAT 1 1 CGAGA 1 1 CGAGG 1 1 2 CGCCT 2 2 CGTGC 1 1 CTCCC 3 3 CTCCT 4 1 5 CTCGT 1 1 CTCTC 2 2 CTGGG 1 1 CTTCT 1 1 GAATC 1 1 GAGAA 2 2 GAGAG 1 1 GAGCT 1 1 GAGGA 4 1 5 GAGGG 1 1 GCACT 1 1 2 GCGAG 1 1 GCGCC 1 1 GCGGA 1 1 GGAGA 3 3 GGAGG 1 1 GGCGA 1 1 GGGAA 2 2 GGGAG 1 1 2 GGGTA 1 1 GGTTG 1 1 GTGCT 1 1 TCAGA 1 1 TCCCC 1 1 TCCCT 2 2 TCCTC 3 1 4 TCTCC 1 1 TCTCG 1 1 TCTGA 1 1 TCTTC 1 1 TGAAA 1 1 TTCCG 2 2 TTCGA 1 1 TTGAT 1 1 TTGCA 1 1 TTTGT 1 1 TTTTC 1 1 AAGGAG 1 1 AGCAAC 1 1 AGGCGG 1 1 AGGGAG 1 1 AGGGCG 1 1 AGGGGA 1 1 AGTGGC 1 1 ATCAAT 2 2 ATCACC 1 1 ATCTCC 1 1 ATGGCA 1 1 CAACAC 1 1 CAACAT 1 1 2 CACAGC 1 1 CAGCAC 1 1 CAGCCA 1 1 CAGCGG 1 1 CAGCTC 3 1 4 CATATA 1 1 CATCCG 1 1 CCACCT 1 1 CCACGC 2 2 CCAGCC 1 1 CCCACC 1 1 CCCATT 1 1 CCGACT 1 1 CCGCCC 1 1 CCGGTG 1 1 CCGTCG 1 1 CCGTGG 2 2 CCTCCG 1 1 CCTCGC 1 1 CGACCA 1 1 CGACGG 1 1 2 CGCCAA 1 1 CGCCCC 1 1 CGCCGA 1 1 CGGAGG 1 1 CGGCAC 1 1 CGGCTG 1 1 CGTGGT 1 1 CTCCAT 1 1 2 CTCCGG 1 1 CTCTCC 1 1 CTTCTC 1 1 GAAGAG 1 1 GAGAGG 1 1 GAGGAC 2 2 GAGTGA 1 1 GCAGCC 1 1 GCCGCA 1 1 GCCTCC 1 1 GCGGGC 1 1 GCGGGG 1 1 GCGTCT 1 1 GCTCCA 1 1 GCTCCG 1 1 GGAGAG 1 1 2 GGAGGG 1 1 GGAGGT 1 1 GGCATC 1 1 GGCGAC 1 1 GGCGGA 1 1 GGCGGG 2 2 GGCGGT 4 1 5 GGGAGA 1 1 GGGGAG 2 2 GGGGGC 1 1 GGTGAT 1 1 GGTGGA 1 1 GTGCCA 1 1 GTGCGT 1 1 TAATCC 1 1 TATATG 1 1 TCCGCC 2 2 TCGACC 1 1 TCGCCA 1 1 TCGCCG 2 2 TCGGCG 1 1 TCTCCA 1 1 TGGAGG 1 1 TGGTTT 1 1 TTCTTT 1 1 TTGATA 1 1 TTTTTA 1 1 TTTTTG 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 4 2 3 4 4 2 3 3 3 2 2 1 3 1 2 1 3 1 1 1 1 1 50 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 4 AC/GT - 302 127 66 52 14 12 13 15 6 3 3 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 630 AG/CT - 946 577 396 260 168 123 87 78 47 50 33 34 25 19 16 16 15 11 12 9 8 3 8 3 3 4 4 2 4 7 2 4 3 2 2 1 2 2 3 1 1 3 2 1 1 1 2 1 1 1 2 1 1 3008 AT/AT - 205 82 52 37 27 18 11 11 11 4 6 2 9 6 6 2 4 1 3 6 2 2 1 1 5 1 2 1 2 1 1 1 523 CG/CG - 398 107 29 12 4 2 552 AAC/GTT 94 40 13 8 1 2 1 1 1 1 1 1 1 165 AAG/CTT 464 171 83 49 36 16 9 8 8 8 6 5 6 3 2 2 4 3 2 2 3 1 891 AAT/ATT 57 17 13 2 3 1 1 1 2 1 1 3 1 3 1 1 2 110 ACC/GGT 621 294 127 44 10 7 9 1 1113 ACG/CTG 930 336 136 44 14 6 4 2 1 1 1474 ACT/ATG 199 64 26 10 2 1 3 1 1 2 2 311 AGC/CGT 1146 513 216 83 19 11 5 5 1 1 1 1 1 2003 AGG/CCT 1570 682 356 120 62 26 8 4 1 1 2830 AGT/ATC 94 36 23 4 6 3 1 1 1 1 170 CCG/CGG 5663 2637 1073 320 133 30 9 6 1 9872 AAAC/GTTT 5 1 6 AAAG/CTTT 16 3 3 1 23 AAAT/ATTT 21 3 1 1 2 28 AACC/GGTT 6 3 9 AACG/CTTG 3 3 AACT/ATTG 5 1 6 AAGC/CGTT 1 1 2 AAGG/CCTT 12 5 1 1 19 AAGT/ATTC 2 2 AATC/AGTT 1 1 AATG/ACTT 1 1 AATT/AATT 26 7 1 34 ACAG/CTGT 4 3 7 ACAT/ATGT 11 5 3 2 1 22 ACCC/GGGT 2 2 ACCG/CTGG 4 4 ACCT/ATGG 12 1 13 ACGC/CGTG 7 7 1 15 ACGG/CCTG 7 1 1 9 ACGT/ATGC 5 1 2 8 ACTC/AGTG 7 7 ACTG/ACTG 2 2 AGAT/ATCT 10 5 2 2 2 1 2 1 1 26 AGCC/CGGT 8 1 1 10 AGCG/CGCT 14 3 17 AGCT/ATCG 45 9 54 AGGC/CCGT 5 2 7 AGGG/CCCT 17 3 1 1 22 AGGT/ATCC 11 2 2 15 AGTC/AGTC 1 1 2 CCCG/CGGG 3 1 4 CCGG/CCGG 4 4 AAAAC/GTTTT 1 1 AAAAG/CTTTT 1 1 AAACC/GGTTT 1 1 AAACT/ATTTG 1 1 AAAGC/CGTTT 2 2 AAATG/ACTTT 1 1 AACCC/GGGTT 2 2 AACGT/ATTGC 1 1 AACTG/ACTTG 1 1 AAGAG/CTCTT 8 8 AAGCT/ATTCG 1 1 AAGGC/CCGTT 2 2 AAGGG/CCCTT 6 6 AAGGT/ATTCC 1 1 AATAT/ATATT 1 1 2 AATCC/AGGTT 3 3 AATCG/AGCTT 3 3 ACACG/CTGTG 2 1 3 ACCCC/GGGGT 1 1 ACCCG/CTGGG 1 1 ACGAG/CTCTG 1 1 ACGCC/CGGTG 1 1 ACGGC/CCGTG 1 1 ACGGG/CCCTG 1 1 ACGTG/ACTGC 1 1 2 ACTAG/ATCTG 1 1 ACTCC/AGGTG 1 1 ACTCG/AGCTG 1 1 AGAGC/CGTCT 1 1 2 AGAGG/CCTCT 23 4 1 28 AGATC/AGTCT 1 1 AGCGG/CCTCG 3 1 4 AGGCG/CCGCT 3 1 4 AGGGG/CCCCT 12 1 13 AGGGT/ATCCC 1 1 CCCCG/CGGGG 1 1 CCGCG/CGCGG 1 1 AAAAAC/GTTTTT 1 1 AAAAAG/CTTTTT 1 1 AAAAAT/ATTTTT 1 1 AAAACC/GGTTTT 1 1 AACACC/GGTTGT 1 1 AACAGC/CGTTGT 1 1 AACATC/AGTTGT 1 1 2 AACGCC/CGGTTG 1 1 AACTAT/ATATTG 1 1 AAGAGG/CCTTCT 1 1 2 AAGGAG/CCTCTT 1 1 AAGGGG/CCCCTT 1 1 AAGGGT/ATTCCC 1 1 AATATC/AGTTAT 2 2 AATCCT/AGGATT 1 1 AATGGC/ACCGTT 1 1 ACACGC/CGTGTG 1 1 ACAGCC/CGGTGT 1 1 2 ACATAT/ATATGT 2 2 ACCACG/CTGGTG 1 1 ACCACT/ATGGTG 1 1 ACCAGC/CGTGGT 2 2 ACCATC/AGTGGT 1 1 ACCCCC/GGGGGT 1 1 ACCGCC/CGGTGG 4 1 5 ACCGGC/CCGTGG 3 3 ACCGTC/AGTGGC 1 1 ACCTCC/AGGTGG 4 4 ACCTCG/AGCTGG 1 1 ACGAGG/CCTGCT 2 2 ACGCAG/CGTCTG 1 1 ACGCCC/CGGGTG 2 2 ACGCCG/CGGCTG 1 1 2 ACGGCC/CCGGTG 1 1 ACGGCG/CCGCTG 2 1 3 ACGGTC/AGTGCC 1 1 ACTCCG/AGGCTG 1 1 ACTCTC/AGAGTG 1 1 AGAGGG/CCCTCT 5 1 6 AGAGGT/ATCTCC 3 1 4 AGCCCC/CGGGGT 1 1 AGCCGC/CGGCGT 3 3 AGCCGT/ATCGGC 1 1 AGCGGC/CCGTCG 4 4 AGCGGG/CCCTCG 1 1 AGCGGT/ATCGCC 1 1 AGCTCC/AGGTCG 3 2 5 AGGCCG/CCGGCT 1 1 2 AGGCGG/CCGCCT 6 1 7 AGGCGT/ATCCGC 1 1 AGGGCG/CCCGCT 1 1 AGGGGG/CCCCCT 2 1 3 CCCCCG/CGGGGG 4 2 6 CCCGCG/CGCGGG 1 1