Specifications ============== Sequence source file: "pp0304nr_000.seq" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 48961 Total size of examined sequences (bp): 37672030 Total number of identified SSRs: 3731 Number of SSR containing sequences: 3108 Number of sequences containing more than 1 SSR: 472 Number of SSRs present in compound formation: 356 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 8 2 2095 3 1315 4 273 5 39 6 1 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 4 C - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 3 AC - 167 53 15 16 9 4 1 1 1 1 1 1 1 1 272 AG - 83 33 17 9 3 12 4 6 9 6 4 1 1 1 1 1 1 1 1 1 1 1 197 AT - 44 33 19 24 14 9 3 5 1 2 2 2 1 159 CA - 174 62 20 17 8 4 1 2 2 1 291 CG - 10 1 1 12 CT - 60 38 21 19 14 12 17 12 9 4 4 1 1 1 213 GA - 113 58 44 21 12 13 12 11 16 11 9 3 1 2 1 4 1 1 1 1 1 1 1 1 339 GC - 9 1 10 GT - 57 35 18 10 8 5 2 1 136 TA - 36 19 21 17 28 8 9 2 3 2 2 1 148 TC - 52 21 17 10 9 4 6 9 9 4 3 4 3 1 1 1 154 TG - 63 41 17 17 11 5 4 1 4 1 164 AAC 8 2 1 3 1 15 AAG 11 4 3 2 1 1 22 AAT 10 7 3 1 1 2 3 27 ACA 14 6 1 1 22 ACC 9 2 11 ACG 8 2 1 1 12 ACT 2 1 1 4 AGA 19 10 2 4 4 2 1 42 AGC 24 11 2 2 39 AGG 18 7 3 1 29 AGT 5 3 1 1 10 ATA 4 2 3 2 1 12 ATC 3 3 ATG 2 2 4 ATT 6 2 2 2 1 1 14 CAA 13 4 2 3 1 23 CAC 15 7 1 23 CAG 28 12 4 2 2 1 49 CAT 5 5 1 11 CCA 6 2 1 9 CCT 19 5 4 2 30 CGA 5 1 2 1 1 1 11 CGC 4 4 CGG 2 2 CGT 9 5 1 1 16 CTA 1 1 1 3 CTC 23 10 3 1 37 CTG 21 14 2 3 1 41 CTT 20 9 5 8 4 46 GAA 14 11 6 3 4 38 GAC 15 5 1 21 GAG 38 11 7 6 62 GAT 6 3 3 12 GCA 42 12 6 4 1 1 1 67 GCC 1 1 GCG 1 1 GCT 21 4 1 3 29 GGA 21 9 9 1 40 GGC 1 2 1 4 GGT 21 10 1 32 GTA 2 1 1 4 GTC 8 6 3 17 GTG 12 12 3 27 GTT 8 4 1 1 3 17 TAA 4 2 4 1 1 12 TAC 5 2 1 1 9 TAG 4 2 1 7 TAT 4 3 3 2 12 TCA 32 1 1 2 36 TCC 25 4 1 30 TCG 12 6 2 2 1 23 TCT 22 6 5 6 3 1 1 44 TGA 8 1 9 TGC 32 7 6 1 46 TGG 13 5 3 21 TGT 13 7 2 3 2 1 28 TTA 6 8 3 3 3 1 1 25 TTC 18 2 7 1 7 1 1 37 TTG 16 4 10 3 33 AAAC 1 3 1 2 7 AAAG 1 1 AAAT 16 5 2 23 AACA 2 2 AACC 1 1 AACT 1 1 AAGA 1 1 AAGC 1 1 AATA 4 1 5 AATG 1 1 AATT 1 1 2 ACAA 2 1 3 ACAG 1 2 1 4 ACAT 1 1 ACCT 1 1 ACGC 1 1 AGAA 3 3 AGAC 1 1 AGCA 1 1 AGCC 1 1 AGGA 1 1 AGGC 1 1 AGTA 1 1 2 AGTC 1 1 AGTG 2 1 3 ATAA 1 1 2 ATAC 1 1 1 3 ATAG 2 2 ATCT 1 1 ATGG 2 2 ATGT 1 1 ATTG 1 1 2 ATTT 3 6 9 CAAA 2 1 3 CAAT 1 1 2 CACT 6 1 7 CAGA 1 1 CAGG 1 1 CATT 1 1 CCCT 1 1 CCTC 4 2 6 CCTT 1 1 2 CGAA 1 1 CGGA 1 1 CTCA 4 1 5 CTCG 1 1 CTGC 1 1 CTGT 1 1 CTTC 2 1 3 GAAA 2 2 GAAT 1 1 GACA 1 1 GACC 1 1 GAGC 2 2 GAGG 2 2 GAGT 2 4 1 7 GATC 1 1 2 GATG 1 1 GCAC 1 1 GCAG 1 2 3 GCCT 1 1 GCTG 1 1 GCTT 2 2 GGAA 2 1 1 1 5 GGTT 1 1 GTGA 5 3 8 GTTC 1 1 GTTT 2 1 3 TAAA 1 1 2 TACA 2 2 TACC 2 1 3 TAGA 2 2 TAGT 2 2 TATC 1 1 TATG 1 4 2 1 8 TATT 3 3 TCAA 1 1 TCAC 5 2 7 TCCC 2 1 3 TCCT 1 1 TCGC 1 1 TCTA 3 1 4 TCTG 1 1 TGAA 1 1 TGAG 1 1 2 TGAT 1 1 TGCC 1 1 TGCT 2 2 TGGA 1 1 TGGC 1 1 TGTA 1 1 TGTC 2 2 TGTT 1 3 1 5 TTAC 1 1 TTAT 5 3 1 9 TTCA 3 3 TTCT 1 1 TTGA 1 1 2 TTGG 1 1 TTGT 4 1 5 TTTA 8 2 1 11 TTTC 1 1 2 TTTG 4 1 1 1 7 AAAAC 1 1 AAAAT 2 2 AACAC 1 1 AAGCA 1 1 AAGGC 1 1 ACGAA 1 1 ATTTT 1 1 CAAAC 1 1 CAATC 1 1 CCCTC 1 1 CCCTT 1 1 CGTTT 1 1 CTCGC 1 1 CTTCC 1 1 CTTCT 1 1 GAGAG 1 1 GCAAC 1 1 GGAGA 1 1 GTAGT 1 1 GTTTT 3 1 4 TAAAA 2 2 TATAT 1 1 TATTT 1 1 TCTTT 1 1 TGCGA 1 1 TGGTC 1 1 TGTTT 1 1 TTTAA 1 1 TTTAT 1 1 TTTGG 1 1 TTTTA 2 2 TTTTC 2 2 CTTTTC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 1 1 1 1 1 7 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 461 191 70 60 36 18 8 5 6 2 1 1 1 1 1 1 863 AG/CT - 308 150 99 59 38 41 39 38 43 25 20 9 5 2 3 2 2 1 5 2 1 2 2 1 1 1 1 1 1 1 903 AT/AT - 80 52 40 41 42 17 12 7 4 4 2 2 2 1 1 307 CG/CG - 19 2 1 22 AAC/GTT 72 27 17 14 6 1 1 138 AAG/CTT 104 42 28 24 23 3 4 1 229 AAT/ATT 34 24 18 11 7 4 3 1 102 ACC/GGT 76 38 9 123 ACG/CTG 102 33 13 8 1 2 1 160 ACT/ATG 24 8 3 5 1 41 AGC/CGT 123 52 18 11 3 1 2 1 211 AGG/CCT 144 46 27 9 2 228 AGT/ATC 51 12 2 3 1 1 1 71 CCG/CGG 8 1 2 1 12 AAAC/GTTT 16 11 5 1 2 35 AAAG/CTTT 8 1 1 10 AAAT/ATTT 40 18 5 1 64 AACC/GGTT 2 1 3 AACG/CTTG 2 3 5 AACT/ATTG 2 3 1 6 AAGC/CGTT 3 3 AAGG/CCTT 5 2 2 2 1 12 AAGT/ATTC 4 1 1 6 AATC/AGTT 3 1 1 5 AATG/ACTT 2 1 1 4 AATT/AATT 1 1 2 ACAG/CTGT 4 5 1 1 11 ACAT/ATGT 6 5 4 1 16 ACCG/CTGG 2 1 3 ACCT/ATGG 4 2 1 1 8 ACGC/CGTG 1 1 2 ACGG/CCTG 3 1 4 ACTC/AGTG 24 12 2 1 39 AGAT/ATCT 3 3 3 1 10 AGCC/CGGT 1 1 AGCG/CGCT 4 4 AGCT/ATCG 1 1 2 AGGC/CCGT 1 4 5 AGGG/CCCT 7 1 4 12 AGTC/AGTC 1 1 AAAAC/GTTTT 5 1 6 AAAAG/CTTTT 3 3 AAAAT/ATTTT 8 1 9 AAACC/GGTTT 1 1 2 AAACG/CTTTG 1 1 AAAGC/CGTTT 2 2 AAATT/AATTT 1 1 AACAC/GTGTT 1 1 AACGC/CGTTG 1 1 AAGAG/CTCTT 1 1 AAGGC/CCGTT 1 1 AAGGG/CCCTT 2 2 AATAT/ATATT 1 1 AATCC/AGGTT 1 1 ACATC/AGTGT 1 1 ACCAG/CTGGT 1 1 ACGCT/ATGCG 1 1 AGAGG/CCTCT 2 2 AGCGG/CCTCG 1 1 AGGGG/CCCCT 1 1 AAAAGG/CCTTTT 1 1