Specifications ============== Sequence source file: "PGI.072705" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 45557 Total size of examined sequences (bp): 36548862 Total number of identified SSRs: 1535 Number of SSR containing sequences: 1348 Number of sequences containing more than 1 SSR: 147 Number of SSRs present in compound formation: 129 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 20 2 759 3 678 4 25 5 10 6 43 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 2 1 1 1 1 1 1 1 2 1 1 14 G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 1 5 AC - 5 2 2 1 1 11 AG - 17 8 3 3 2 1 2 1 2 1 1 1 1 1 1 1 2 1 2 1 1 1 54 AT - 60 42 30 22 13 6 8 10 9 8 2 3 5 7 2 6 1 1 2 1 2 2 2 1 1 1 247 CA - 5 2 1 2 10 CG - 5 5 CT - 17 7 2 2 3 2 2 1 1 2 2 1 1 1 1 1 1 1 48 GA - 16 6 4 2 1 1 1 2 1 2 1 2 5 2 3 2 3 1 1 4 1 3 2 1 1 1 2 1 1 1 1 1 1 77 GC - 1 1 2 GT - 3 1 1 3 1 1 10 TA - 69 37 21 18 20 11 3 5 4 3 4 3 7 4 3 1 4 1 3 1 1 1 1 225 TC - 16 10 2 3 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49 TG - 14 6 1 21 AAC 3 5 2 10 AAG 21 15 4 40 AAT 9 3 5 1 18 ACA 1 1 ACC 5 5 ACG 1 1 ACT 1 1 2 AGA 18 5 1 1 1 26 AGC 14 2 1 17 AGG 12 3 4 1 20 ATA 4 2 1 7 ATC 6 1 7 ATG 6 2 8 ATT 14 5 1 1 21 CAA 21 5 2 28 CAC 5 4 2 11 CAG 35 14 3 3 1 1 1 58 CAT 8 1 9 CCA 14 2 1 17 CCG 3 1 4 CCT 12 1 1 14 CGA 1 1 CGC 10 1 11 CGG 1 1 CTC 15 3 18 CTG 9 9 CTT 7 3 10 GAA 19 3 3 1 26 GAC 7 4 2 13 GAG 16 4 20 GAT 1 1 1 3 GCA 24 5 3 1 1 34 GCC 5 1 1 1 8 GCG 1 1 GCT 1 1 2 GGA 9 1 5 15 GGC 6 7 3 1 1 18 GGT 6 6 GTG 5 3 8 TAA 9 2 2 2 15 TAT 8 4 1 1 14 TCA 7 1 8 TCC 4 5 1 1 11 TCG 3 1 4 TCT 13 1 1 15 TGA 11 6 17 TGC 10 2 2 1 1 16 TGG 5 1 1 7 TGT 2 1 1 1 5 TTA 9 8 1 18 TTC 9 1 2 1 13 TTG 6 1 7 AAAT 2 2 AAGA 1 1 AATA 1 1 AATT 1 1 AGCC 3 3 ATAA 1 1 1 3 ATCT 1 1 2 CTGC 1 1 GTGC 1 1 TAGT 1 1 TATG 1 1 TATT 1 1 TGCC 1 1 2 TGTT 1 1 TTAT 1 1 TTTC 1 1 TTTG 2 2 AATCA 1 1 AGGGC 1 1 CAACC 1 1 CATAC 1 1 CATCC 1 1 GAGGC 1 1 TCAAT 1 1 TGTTT 1 1 TTGCG 1 1 TTTTG 1 1 AACGGA 1 1 AAGGGC 1 1 ACAAGG 1 1 AGAGGC 1 1 AGCCTC 1 1 AGGGGC 2 2 AGGTCG 1 1 ATTGGG 1 1 CAGCAT 1 1 CCATCT 1 1 CCCTGC 2 2 CCTCCG 1 1 CCTGGT 1 1 CGCTGT 1 1 CGGAGC 1 1 CGGGGA 1 1 CTCAAT 1 1 CTCTCG 1 1 GAGGAA 1 1 2 GATTGG 1 1 GCAGGG 2 1 3 GCGGAT 1 1 GGAGAA 1 1 2 GGGAGA 1 1 GTGACC 1 1 TCAACA 1 1 TCACCA 1 1 2 TCCACC 1 1 TCCCAG 1 1 TCGTCA 1 1 TGAACA 1 1 TGAGGC 1 1 TGCGAT 1 1 TGTGGC 1 1 TTCGAT 1 1 TTGCCC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 2 1 1 1 1 1 1 2 1 2 1 2 1 1 19 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 27 11 5 4 1 1 1 2 52 AG/CT - 66 31 11 10 10 1 1 3 3 1 5 1 5 3 4 8 2 6 3 4 3 3 5 2 2 1 4 2 2 4 1 1 3 3 1 1 1 1 1 2 1 1 1 1 1 1 1 228 AT/AT - 129 79 51 40 33 17 11 15 13 11 6 6 12 11 5 7 5 1 3 4 2 2 3 1 1 1 1 1 1 472 CG/CG - 6 1 7 AAC/GTT 33 11 5 1 1 51 AAG/CTT 87 28 8 2 1 1 1 1 1 130 AAT/ATT 53 24 10 3 1 1 1 93 ACC/GGT 40 9 4 1 54 ACG/CTG 29 7 4 1 1 42 ACT/ATG 19 9 1 1 30 AGC/CGT 76 21 7 3 2 1 2 1 113 AGG/CCT 68 17 10 2 1 98 AGT/ATC 21 2 1 24 CCG/CGG 25 11 4 1 2 43 AAAC/GTTT 3 3 AAAG/CTTT 2 2 AAAT/ATTT 5 1 1 1 8 AATC/AGTT 1 1 AATT/AATT 1 1 ACAT/ATGT 1 1 ACGC/CGTG 1 1 ACGG/CCTG 2 1 3 AGAT/ATCT 1 1 2 AGCC/CGGT 3 3 AAAAC/GTTTT 2 2 AAATC/AGTTT 1 1 AACCC/GGGTT 1 1 AACGC/CGTTG 1 1 AAGTT/AATTC 1 1 ACCAT/ATGGT 1 1 AGGCG/CCGCT 1 1 AGGGC/CCCGT 1 1 AGGGT/ATCCC 1 1 AAACGG/CCTTTG 1 1 AAAGCT/ATTTCG 1 1 AACATC/AGTTGT 1 1 AACATG/ACTTGT 1 1 AACCCT/ATTGGG 2 2 AACGCT/ATTGCG 1 1 AACGGG/CCCTTG 1 1 AAGAGG/CCTTCT 1 1 2 AAGGAC/CCTGTT 1 1 AAGGAG/CCTCTT 1 1 2 AAGGGC/CCCGTT 1 1 AATCTC/AGAGTT 1 1 ACACCG/CTGTGG 1 1 ACAGCG/CGCTGT 1 1 ACCAGG/CCTGGT 1 1 ACCATC/AGTGGT 1 1 2 ACCGTG/ACTGGC 1 1 ACCTCC/AGGTGG 1 1 ACGCCT/ATGCGG 1 1 ACGGGG/CCCCTG 3 3 ACTCCG/AGGCTG 1 1 AGAGCG/CGCTCT 1 1 AGAGGC/CCGTCT 1 1 AGAGGG/CCCTCT 1 1 AGAGGT/ATCTCC 1 1 AGCAGT/ATCGTC 1 1 AGCATC/AGTCGT 1 1 AGCCGG/CCTCGG 1 1 AGCCTC/AGTCGG 1 1 AGCTCC/AGGTCG 1 1 AGGCGG/CCGCCT 1 1 AGGGGC/CCCCGT 4 1 5 AGGGTC/AGTCCC 1 1