Specifications ============== Sequence source file: "PPLGI.021005" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 54756 Total size of examined sequences (bp): 34854417 Total number of identified SSRs: 5146 Number of SSR containing sequences: 4437 Number of sequences containing more than 1 SSR: 585 Number of SSRs present in compound formation: 410 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 8 2 2584 3 2300 4 131 5 43 6 80 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 1 1 1 1 8 AC - 35 21 12 8 2 6 2 1 1 4 92 AG - 96 80 33 44 36 14 11 18 13 9 2 4 2 3 1 2 1 1 370 AT - 95 49 47 39 16 15 10 7 7 3 5 3 5 5 5 5 2 3 3 4 3 1 1 2 1 336 CA - 18 12 7 6 4 3 1 1 1 1 54 CG - 5 3 1 1 10 CT - 167 94 58 49 37 34 18 13 16 12 6 4 2 3 1 1 1 516 GA - 73 35 41 19 17 20 11 11 7 5 4 2 3 2 1 2 1 1 1 256 GC - 10 3 1 14 GT - 18 20 6 10 7 4 2 1 2 1 71 TA - 125 57 44 25 23 15 9 6 3 1 2 5 3 1 1 1 2 1 1 1 1 1 1 329 TC - 121 81 65 33 35 21 23 9 11 7 2 2 4 1 1 1 417 TG - 37 31 15 12 6 8 1 3 1 1 2 1 1 119 AAC 8 4 3 3 1 1 1 21 AAG 64 21 15 9 1 2 5 2 119 AAT 16 12 10 4 2 3 1 2 1 51 ACA 20 4 4 3 2 33 ACC 14 15 11 2 2 44 ACG 3 2 1 6 ACT 6 2 8 AGA 34 14 4 3 2 7 3 1 1 1 70 AGC 50 17 3 8 3 1 82 AGG 10 8 3 1 1 23 AGT 2 2 ATA 15 9 4 4 2 1 1 1 37 ATC 22 6 5 1 34 ATG 18 6 1 25 ATT 15 11 7 3 5 1 1 1 44 CAA 23 7 4 2 36 CAC 27 23 12 7 4 2 75 CAG 47 26 14 8 4 2 1 1 103 CAT 18 13 3 1 1 36 CCA 31 27 7 3 4 1 1 74 CCG 13 2 1 16 CCT 33 9 5 4 3 1 55 CGA 5 3 1 1 1 11 CGC 3 1 1 5 CGG 3 1 4 CGT 1 1 2 CTA 1 1 2 CTC 31 16 9 5 2 1 64 CTG 19 8 3 1 1 32 CTT 41 13 7 6 4 1 1 2 1 76 GAA 53 19 11 6 2 1 92 GAC 14 9 4 5 3 1 1 1 38 GAG 29 17 11 5 1 1 64 GAT 31 10 5 3 49 GCA 32 12 6 7 1 1 59 GCC 15 5 20 GCG 5 2 2 1 10 GCT 32 12 6 3 1 54 GGA 18 7 3 1 29 GGC 13 4 3 1 21 GGT 21 12 4 37 GTA 4 1 5 GTC 1 1 GTG 19 5 3 1 1 29 GTT 6 1 1 1 1 10 TAA 9 3 2 1 1 16 TAC 1 1 1 3 TAG 8 5 13 TAT 11 8 8 4 2 1 1 35 TCA 20 5 5 2 2 34 TCC 15 14 9 1 2 1 42 TCG 5 5 3 13 TCT 43 25 6 5 2 3 1 85 TGA 22 17 6 2 1 48 TGC 29 16 7 2 1 1 1 57 TGG 23 9 7 6 45 TGT 10 4 2 1 1 18 TTA 27 15 6 4 5 2 59 TTC 51 19 17 9 3 5 1 1 1 1 108 TTG 9 3 3 1 16 AAAG 5 1 6 AAAT 4 1 5 AAGA 1 1 2 AATA 5 2 7 AATC 3 1 4 ACAA 1 1 ACAT 1 1 AGAA 1 1 1 1 4 AGAC 1 1 AGAT 1 1 AGGA 1 1 ATAA 2 2 ATAC 1 1 2 ATAG 1 1 ATCA 1 1 2 ATCC 1 1 ATCG 1 1 ATCT 2 2 ATTA 2 1 3 CAAA 2 2 CACT 2 1 3 CAGC 1 1 CATA 1 1 1 3 CATC 1 1 CATT 1 1 CCAG 1 1 CCCT 2 2 CCTC 6 1 1 8 CCTT 2 2 CGCC 1 1 CTAG 1 1 CTAT 1 1 CTCC 3 1 1 5 CTTC 1 1 CTTG 1 1 GAAA 1 1 GAAG 2 1 3 GACA 1 1 GAGG 1 1 2 GATC 1 1 GCTT 1 1 GGAC 1 1 2 GGAG 1 1 GGCA 1 1 GGTT 1 1 GTCT 1 1 TAGC 1 1 TATC 1 1 TATT 2 2 TCCC 5 5 TCTT 1 1 2 TGAT 1 1 TGTA 1 1 TGTT 1 1 TTAT 1 1 TTCA 1 1 TTCT 2 2 TTGA 1 1 TTTA 1 1 2 TTTC 8 2 10 TTTG 3 1 4 AAAAG 6 6 AAAGC 1 1 AAAGG 1 1 AAGAG 1 1 AATCC 1 1 AATCG 2 2 ACAGG 1 1 ACCAC 2 2 AGAAA 1 1 AGAAC 1 1 AGAGG 2 2 AGGAG 1 1 AGGGT 1 1 ATATC 1 1 CAATC 1 1 CACCC 1 1 CATGT 1 1 CCCCA 1 1 CCTCA 1 1 CTCCT 1 1 CTCTA 1 1 CTCTC 1 1 CTTCC 1 1 GAAAA 1 1 GCTTT 1 1 GGAGA 1 1 GGATT 1 1 TATTT 1 1 TCTCC 1 1 TGCTG 1 1 TGTTT 1 1 TTCTG 1 1 TTTCT 2 2 TTTTC 1 1 AAAAAG 1 1 AAACAG 1 1 AAATCC 2 2 AACCAC 1 1 AACCCC 1 1 AACCCT 1 1 2 AATAAA 1 1 AATAGG 1 1 ACCCGC 1 1 ACCTCT 1 1 ACGAGG 1 1 AGAAAG 1 1 AGGTCG 1 1 ATGCTG 1 1 ATGGTG 1 1 ATTATG 1 1 ATTTGG 1 1 ATTTTT 1 1 CAACAC 1 1 CACAGC 2 1 3 CACCAA 1 1 CACCAG 1 1 CACCCA 1 1 CAGCAA 1 1 CAGCAC 2 1 1 4 CAGCTC 1 1 CATGCT 1 1 CCAGCA 1 1 2 CCATCT 2 2 CCCTCT 1 1 CGAGCA 1 1 CGCTCC 1 1 CTCATG 1 1 CTCTCC 1 1 CTGCAC 1 1 CTGCCT 1 1 CTTCAC 1 1 GAAAAA 1 1 GAAAAG 2 2 GAAGCG 1 1 GAGCAT 2 2 GCACAG 1 1 GCAGAA 1 1 GCAGCC 2 2 GCGATG 1 1 GCTGTG 1 1 GCTGTT 1 1 GGAGCA 1 1 GGCACC 1 1 GGTGGA 1 1 GTGGTT 1 1 TATCTC 1 1 TCAAGG 1 1 TCACCA 1 1 TCGCCG 1 1 TCTCAC 1 1 TCTCTT 1 1 TGCTGG 1 1 TTAGGG 1 1 TTCCTC 1 1 TTGGAG 1 1 TTTCCT 1 1 TTTTAT 1 1 2 TTTTCT 1 1 TTTTGT 1 1 TTTTTC 1 1 2 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 1 1 1 1 8 AC/GT - 108 84 40 36 19 21 6 4 4 2 6 2 1 1 1 1 336 AG/CT - 457 290 197 145 125 89 63 51 47 33 14 12 5 11 4 2 3 3 2 1 2 1 1 1 1559 AT/AT - 220 106 91 64 39 30 19 13 10 4 7 3 10 8 6 6 3 5 4 5 4 2 1 1 2 1 1 665 CG/CG - 15 6 2 1 24 AAC/GTT 76 23 17 8 6 2 1 1 134 AAG/CTT 286 111 60 38 10 22 11 4 3 2 1 1 1 550 AAT/ATT 93 58 37 20 15 7 6 2 2 1 1 242 ACC/GGT 135 91 44 17 10 5 1 1 304 ACG/CTG 102 50 21 12 7 3 2 1 198 ACT/ATG 78 37 12 7 1 135 AGC/CGT 136 60 27 23 7 4 1 1 1 260 AGG/CCT 136 71 40 16 9 3 2 277 AGT/ATC 74 29 13 4 2 2 124 CCG/CGG 52 15 6 3 76 AAAC/GTTT 6 1 1 8 AAAG/CTTT 19 4 3 1 27 AAAT/ATTT 15 4 19 AACC/GGTT 1 1 AACG/CTTG 2 2 AACT/ATTG 1 1 2 AAGG/CCTT 6 1 7 AAGT/ATTC 1 1 2 AATC/AGTT 4 2 6 AATT/AATT 2 1 3 ACAG/CTGT 2 1 3 ACAT/ATGT 2 2 1 2 7 ACGG/CCTG 1 1 2 ACTC/AGTG 2 1 3 AGAT/ATCT 4 1 1 6 AGCC/CGGT 2 2 AGCT/ATCG 3 1 4 AGGC/CCGT 1 1 AGGG/CCCT 18 2 3 23 AGGT/ATCC 1 1 2 CCCG/CGGG 1 1 AAAAC/GTTTT 1 1 AAAAG/CTTTT 10 1 11 AAAAT/ATTTT 1 1 AAACG/CTTTG 1 1 AAAGC/CGTTT 1 1 AAAGG/CCTTT 1 1 AACAG/CTTGT 1 1 AACCT/ATTGG 1 1 AAGAC/CTGTT 1 1 AAGAG/CTCTT 1 1 AAGGG/CCCTT 1 1 AATCC/AGGTT 2 2 AATCG/AGCTT 2 2 ACACC/GGTGT 2 2 ACACG/CTGTG 1 1 ACAGG/CCTGT 1 1 ACAGT/ATGTC 1 1 ACCCC/GGGGT 2 2 ACCTC/AGTGG 1 1 ACTCT/AGATG 1 1 AGAGG/CCTCT 7 7 AGGGT/ATCCC 1 1 AGTAT/ATATC 1 1 AAAAAC/GTTTTT 1 1 AAAAAG/CTTTTT 3 1 1 5 AAAAAT/ATTTTT 3 1 4 AAAAGG/CCTTTT 3 3 AAACAG/CTTTGT 1 1 AAACCT/ATTTGG 1 1 AAAGAG/CTCTTT 1 1 2 AAATCC/AGGTTT 2 2 AACACC/GGTTGT 2 1 3 AACAGC/CGTTGT 1 1 AACCAC/GGTGTT 1 1 AACCCC/GGGGTT 1 1 AACCCT/ATTGGG 1 1 2 AACCTC/AGTTGG 1 1 AACGAC/CTGTTG 1 1 AAGCAG/CGTCTT 1 1 AAGCGG/CCTTCG 1 1 AAGGAG/CCTCTT 1 1 AAGGTC/AGTTCC 1 1 AAGTGG/ACCTTC 1 1 AATACT/ATGATT 1 1 AATAGG/ATCCTT 1 1 AATCCC/AGGGTT 1 1 ACACCC/GGGTGT 1 1 ACACCG/CTGTGG 1 1 ACAGCC/CGGTGT 2 1 3 ACAGGC/CCGTGT 1 1 ACCACG/CTGGTG 1 1 ACCACT/ATGGTG 1 1 ACCAGC/CGTGGT 4 1 1 1 7 ACCATC/AGTGGT 1 1 ACCCGC/CGTGGG 1 1 ACCGCT/ATGGCG 1 1 ACCGGC/CCGTGG 1 1 ACCTCC/AGGTGG 1 1 ACCTCT/AGATGG 1 1 ACCTGC/ACGTGG 1 1 ACGACT/ATGCTG 1 1 ACGAGC/CGTGCT 1 1 ACGAGG/CCTGCT 1 1 ACGAGT/ATGCTC 1 1 2 ACGGAG/CCTCTG 1 1 ACTCGT/AGCATG 2 2 ACTCTC/AGAGTG 1 1 AGAGAT/ATCTCT 1 1 AGAGGG/CCCTCT 2 2 AGAGGT/ATCTCC 2 2 AGCAGG/CCTCGT 1 1 AGCCGC/CGGCGT 2 2 AGCGGC/CCGTCG 1 1 AGCTCC/AGGTCG 2 2 AGGGCG/CCCGCT 1 1