Specifications ============== Sequence source file: "SOGI.101404" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 78547 Total size of examined sequences (bp): 59153866 Total number of identified SSRs: 7359 Number of SSR containing sequences: 6553 Number of sequences containing more than 1 SSR: 683 Number of SSRs present in compound formation: 465 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 1937 3 4900 4 193 5 238 6 91 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 total AC - 42 15 8 3 7 4 1 1 3 1 1 1 1 1 89 AG - 70 35 22 11 8 4 4 5 4 4 3 1 4 1 3 3 1 3 1 1 1 1 2 192 AT - 67 27 10 6 7 4 7 8 5 3 5 3 1 2 2 3 1 2 1 1 1 3 4 1 3 2 4 3 1 2 1 2 1 193 CA - 44 13 10 9 2 1 1 1 1 1 1 84 CG - 69 24 8 1 1 103 CT - 135 75 38 27 13 15 11 8 8 4 6 9 8 2 4 2 1 2 2 1 1 1 1 3 377 GA - 85 46 25 18 7 11 3 2 5 2 1 4 1 1 3 1 2 1 3 1 1 223 GC - 57 10 1 1 69 GT - 22 20 10 8 1 2 1 1 1 1 2 4 2 1 1 1 1 1 1 81 TA - 64 27 23 17 6 4 11 3 2 7 3 3 2 4 1 3 4 6 2 3 5 4 3 5 1 2 3 3 4 2 1 1 1 1 1 232 TC - 79 42 24 13 10 3 2 7 4 2 2 1 2 1 1 1 194 TG - 36 13 16 10 6 2 3 4 2 1 1 1 1 1 1 1 1 100 AAC 6 3 1 1 1 12 AAG 34 14 8 1 1 1 1 1 61 AAT 5 1 1 1 1 1 1 1 12 ACA 11 9 2 2 1 2 1 1 1 30 ACC 28 8 3 4 2 1 46 ACG 21 6 3 2 32 ACT 5 5 AGA 21 5 1 1 1 1 30 AGC 101 24 10 8 2 1 1 147 AGG 41 14 7 2 2 1 2 1 70 AGT 4 1 1 6 ATA 3 2 1 1 7 ATC 14 2 2 1 1 1 21 ATG 21 6 1 1 29 ATT 4 1 1 1 1 8 CAA 17 8 8 2 3 1 39 CAC 59 29 10 2 2 1 1 104 CAG 114 44 16 15 8 4 1 202 CAT 2 1 2 1 1 7 CCA 59 19 9 2 89 CCG 263 64 42 12 4 2 1 388 CCT 73 40 17 2 2 134 CGA 62 22 5 4 2 95 CGC 243 80 43 16 4 1 1 388 CGG 219 97 25 9 7 1 358 CGT 43 12 4 1 1 61 CTA 8 1 9 CTC 61 22 14 1 3 101 CTG 30 15 6 1 3 55 CTT 17 3 1 21 GAA 24 6 3 1 2 36 GAC 60 24 4 2 1 1 92 GAG 69 25 16 4 3 1 118 GAT 16 10 8 1 2 37 GCA 97 41 13 4 2 2 1 160 GCC 214 67 42 11 2 1 337 GCG 228 85 30 12 7 2 364 GCT 72 37 20 3 132 GGA 67 23 9 1 1 1 102 GGC 256 87 31 15 8 2 399 GGT 28 8 6 1 43 GTA 2 2 1 5 GTC 34 19 5 4 1 63 GTG 13 8 1 22 GTT 5 1 1 1 1 9 TAA 3 2 1 6 TAC 12 1 1 14 TAG 4 4 TAT 4 5 1 1 1 1 13 TCA 6 1 1 8 TCC 65 21 3 1 90 TCG 45 8 6 59 TCT 14 1 15 TGA 23 4 1 28 TGC 44 21 5 1 71 TGG 23 1 2 2 28 TGT 4 11 5 6 1 27 TTA 1 1 1 1 4 TTC 19 7 1 27 TTG 13 3 1 2 1 20 AAAC 1 1 AAAG 2 2 1 1 1 7 AAAT 1 1 AAGA 1 1 2 AATG 1 1 AATT 1 1 ACAG 1 1 ACCG 2 2 ACTG 2 2 AGAT 2 2 AGCC 3 3 AGCG 4 4 AGCT 4 4 AGGA 1 1 2 AGGC 2 1 3 ATCC 4 1 5 ATCG 3 3 ATCT 1 1 1 3 ATGA 2 2 ATGG 2 2 ATGT 1 1 2 ATTA 4 4 ATTC 1 1 ATTG 1 1 ATTT 1 1 CAAA 1 1 CACC 1 1 CAGC 2 2 CAGG 1 1 CATA 2 1 3 CATC 1 1 CATG 1 1 CCAC 1 1 CCAT 3 3 CCGC 2 2 CCGT 1 1 CCTC 3 1 4 CCTT 1 1 CGAT 1 1 CGCA 1 1 CGCC 2 2 CGCT 2 2 CGGA 1 1 CGGC 4 4 CGTT 1 1 CTAG 1 1 2 CTCA 1 1 CTCC 8 1 9 CTCG 2 1 3 CTGC 2 1 1 4 CTGT 1 1 GAAA 1 1 1 1 4 GAAG 6 1 1 8 GACC 1 1 GAGG 1 1 GATA 1 1 GATC 1 1 GATT 1 1 GCAC 1 1 GCAT 1 1 GCCG 1 1 GCCT 2 1 3 GCGT 2 2 GCTA 1 1 2 GCTC 1 1 GGAA 1 1 1 3 GGAT 1 1 GGTT 1 1 2 GTGC 1 2 3 TAAA 2 2 TAAT 1 1 TACA 1 1 TAGC 1 1 TATC 1 1 2 TATG 1 1 1 3 TCCC 2 1 3 TCGA 1 1 TCGG 1 1 TCTA 1 1 TCTG 1 1 2 TCTT 1 1 2 TGCA 1 1 TGCG 1 1 TGGC 1 1 TGTA 3 1 4 TGTC 1 1 2 TTAA 1 1 TTAT 1 1 2 TTCC 1 1 TTCT 1 1 2 TTTA 1 1 2 TTTC 4 1 5 AAAAG 1 1 2 AAAAT 1 1 2 AAGCA 1 1 AAGGA 2 2 ACCTC 1 1 ACCTT 1 1 AGCAC 1 1 AGCAG 1 1 AGGAC 18 2 20 AGGAG 1 1 ATATG 1 1 2 ATATT 1 1 ATCCA 1 2 3 ATCCC 2 2 ATCGA 1 1 ATGTA 1 1 CACCC 1 1 CATGC 1 1 CATTA 1 1 CCACC 1 1 CCAGG 1 1 CCCCT 5 5 CCCTG 2 2 CCGCT 1 1 CCTCT 1 1 CCTTT 1 1 CGCCG 2 2 CGCCT 1 1 CGCTC 1 1 CGGTA 1 1 CGTGT 4 4 CTCCA 1 1 CTCCT 1 1 CTCTC 1 1 CTGGG 1 1 2 CTGTC 1 1 CTGTG 1 1 CTTCC 1 1 CTTTT 1 2 1 4 GAAAA 1 1 GACCT 2 2 GAGAC 1 1 GAGCT 1 1 GAGGA 1 1 GATGC 1 1 GATTG 1 1 GATTT 2 2 GGAAG 1 1 GGTGA 1 1 GTCCT 121 1 122 GTGTT 1 1 GTTCT 1 1 TACAT 1 1 TATTT 1 1 TCACC 1 1 TCAGT 1 1 TCCAA 1 1 TCCCA 1 1 TCCCT 2 2 TCCTG 1 1 TCTCT 1 1 TGCTC 1 1 TGCTG 1 1 TGGTG 1 1 TGTGT 1 1 TTACA 1 1 TTCTA 1 1 TTCTC 1 1 TTCTT 1 1 TTTAT 2 2 TTTCA 1 1 TTTCT 1 1 TTTTC 1 1 2 AAAGGT 1 1 AAGAGG 1 1 AAGCTC 1 1 ACAGCA 1 1 ACATGA 1 1 2 ACCAGC 1 1 ACGAGG 1 1 ACTCCA 1 1 AGCGGG 1 1 AGGGAC 1 1 AGGGAG 1 1 ATAGAT 1 1 ATGGAG 1 1 ATTGGA 1 1 CACCAA 2 2 CACGCC 2 2 CAGTCA 1 1 CATCTC 1 1 CCAACA 1 1 2 CCACAG 1 1 CCCATC 1 1 CCCATG 1 1 CCGACG 1 1 CCGCCC 1 1 CCGCCT 3 3 CCTCGC 1 1 CCTCTG 1 1 CGACTC 1 1 CGCACC 1 1 CGCCGA 1 1 CGCGCA 1 1 CGGCGC 1 1 CGGCTT 1 1 CTATAT 2 2 CTATCC 1 1 CTCGCT 1 1 CTGCGG 1 1 CTGCTC 1 1 CTGGGC 1 1 CTTCCC 1 1 CTTTTT 1 1 GAACCT 1 1 GACGAG 1 1 GAGCAA 1 1 GAGGAA 1 1 GAGGTC 1 1 GAGTGA 1 1 GATAGG 1 1 GATGAA 1 1 GCAACA 1 1 GCAAGG 1 1 GCACCA 1 1 GCAGGA 1 1 GCCACC 1 1 GCCCAG 1 1 GCTCCG 1 1 GCTTCG 1 1 GGAGAG 1 1 GGAGCG 1 1 GGAGTC 1 1 GGCGGA 3 3 GGCGGT 1 1 GGCGTC 1 1 GGCGTG 1 1 GGGACG 2 2 GGGAGA 1 1 GGGGCG 1 1 GTCCCG 1 1 GTGCAC 1 1 GTGCAG 1 1 2 GTGTAC 1 1 GTTATT 1 1 TAATCC 1 1 TATATC 1 1 TCACAG 1 1 TCATCC 1 1 TCGCCG 1 1 TCTCTG 1 1 TGCAAA 1 1 TGGTGT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 total AC/GT - 144 61 44 30 16 9 6 7 7 2 3 3 4 1 3 1 1 1 2 1 1 1 1 1 1 2 1 354 AG/CT - 369 198 109 69 38 33 20 22 21 12 12 15 15 4 11 5 2 2 7 3 1 2 1 2 2 2 3 1 1 3 1 986 AT/AT - 131 54 33 23 13 8 18 11 5 5 12 6 4 4 6 4 4 6 7 3 4 8 8 1 6 7 1 4 3 3 3 5 5 2 1 1 1 2 1 1 1 425 CG/CG - 126 34 9 2 1 172 AAC/GTT 56 35 17 13 6 5 1 2 1 1 137 AAG/CTT 129 35 14 3 4 1 1 1 1 1 190 AAT/ATT 20 10 6 2 2 2 1 2 1 1 1 1 1 50 ACC/GGT 210 73 31 11 4 1 1 1 332 ACG/CTG 289 125 43 13 6 1 477 ACT/ATG 85 21 10 2 1 3 122 AGC/CGT 434 148 54 31 14 4 5 2 692 AGG/CCT 376 145 66 10 11 2 1 2 2 615 AGT/ATC 32 7 4 4 1 2 1 51 CCG/CGG 1423 480 213 75 30 7 3 3 2234 AAAC/GTTT 1 1 2 AAAG/CTTT 10 3 2 4 1 1 1 22 AAAT/ATTT 4 1 1 1 1 8 AACC/GGTT 1 1 2 AACT/ATTG 2 2 AAGC/CGTT 1 1 AAGG/CCTT 9 2 2 1 1 15 AAGT/ATTC 1 1 AATG/ACTT 3 3 AATT/AATT 5 1 1 7 ACAG/CTGT 3 3 6 ACAT/ATGT 7 1 1 1 1 1 1 13 ACCC/GGGT 2 2 ACCG/CTGG 4 4 ACCT/ATGG 1 2 3 ACGC/CGTG 6 2 8 ACGG/CCTG 5 1 2 8 ACGT/ATGC 3 3 ACTC/AGTG 1 1 ACTG/ACTG 2 2 AGAT/ATCT 4 1 1 1 1 1 9 AGCC/CGGT 5 1 6 AGCG/CGCT 9 1 10 AGCT/ATCG 10 4 1 15 AGGC/CCGT 4 1 5 AGGG/CCCT 14 3 17 AGGT/ATCC 8 1 9 CCCG/CGGG 4 4 CCGG/CCGG 5 5 AAAAG/CTTTT 5 3 1 1 1 11 AAAAT/ATTTT 4 1 5 AAACT/ATTTG 2 2 AAAGC/CGTTT 1 1 AAAGG/CCTTT 3 3 AAAGT/ATTTC 1 1 AACAC/GTGTT 1 1 2 AACCT/ATTGG 1 1 AAGAC/CTGTT 1 1 AAGAG/CTCTT 1 1 2 AAGAT/ATTCT 1 1 AAGGG/CCCTT 3 1 4 AAGTC/AGTTC 1 1 AATAT/ATATT 1 1 AATCC/AGGTT 1 3 4 AATCG/AGCTT 1 1 AATGG/ACCTT 1 1 AATGT/ACATT 3 1 4 ACACC/GGTGT 1 1 ACACG/CTGTG 1 1 2 ACAGC/CGTGT 5 5 ACAGG/CCTGT 140 4 144 ACCCC/GGGGT 2 2 ACCCG/CTGGG 1 1 2 ACCTC/AGTGG 1 1 2 ACCTG/ACTGG 2 2 ACGAG/CTCTG 2 2 ACGCT/ATGCG 1 1 ACGGG/CCCTG 2 2 ACGGT/ATGCC 2 2 ACTAT/ATATG 1 1 2 ACTCC/AGGTG 2 2 ACTCG/AGCTG 1 1 AGAGC/CGTCT 1 1 AGAGG/CCTCT 4 1 5 AGCGG/CCTCG 1 1 AGGCC/CCGGT 1 1 AGGCG/CCGCT 2 2 AGGGG/CCCCT 5 5 AGGGT/ATCCC 2 1 3 CCGCG/CGCGG 2 2 AAAAAG/CTTTTT 1 1 AAAGGT/ATTTCC 1 1 AAATGC/ACGTTT 1 1 AACAAT/ATTGTT 1 1 AACACC/GGTTGT 1 3 4 AACAGC/CGTTGT 2 2 AACATG/ACTTGT 1 1 2 AACCAC/GGTGTT 1 1 AACCTG/ACTTGG 1 1 AACCTT/AATTGG 1 1 AACTCC/AGGTTG 1 1 AAGAGC/CGTTCT 1 1 AAGAGG/CCTTCT 1 1 2 AAGATG/ACTTCT 1 1 AAGCCG/CGGCTT 2 2 AAGCTC/AGTTCG 1 1 AAGGGC/CCCGTT 1 1 AAGGGG/CCCCTT 1 1 AATCCT/AGGATT 1 1 ACAGAG/CTCTGT 1 1 ACAGCC/CGGTGT 1 1 ACAGGG/CCCTGT 1 1 ACAGTC/AGTGTC 1 1 2 ACATGC/ACGTGT 1 1 ACCAGC/CGTGGT 2 2 ACCCGC/CGTGGG 1 1 2 ACCCGG/CCTGGG 1 1 ACCGCC/CGGTGG 2 2 ACCTCT/AGATGG 1 1 ACGAGG/CCTGCT 2 1 3 ACGCCC/CGGGTG 2 2 ACGCCG/CGGCTG 3 3 ACGCGC/CGCGTG 1 1 ACGGAG/CCTCTG 1 1 ACGGGG/CCCCTG 2 2 ACGGGT/ATGCCC 1 1 ACGTCC/AGGTGC 1 1 2 ACGTGC/ACGTGC 1 1 ACTCCG/AGGCTG 1 1 ACTCTC/AGAGTG 1 1 AGAGCG/CGCTCT 1 1 AGAGGG/CCCTCT 1 2 3 AGAGGT/ATCTCC 1 1 AGATAT/ATATCT 1 1 2 4 AGCAGG/CCTCGT 1 1 AGCCGC/CGGCGT 1 1 AGCCTC/AGTCGG 1 1 AGCGGC/CCGTCG 1 1 AGCGGG/CCCTCG 2 1 3 AGCTCC/AGGTCG 1 1 AGGAGT/ATCCTC 1 1 AGGCCC/CCGGGT 1 1 AGGCCG/CCGGCT 1 1 AGGCGG/CCGCCT 6 6 AGGGAT/ATCCCT 2 2 AGGGCC/CCCGGT 1 1 AGGGGT/ATCCCC 1 1 CCCCCG/CGGGGG 2 2 CCGCGG/CCGGCG 1 1