Specifications ============== Sequence source file: "TR0505nr.fas" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 4866 Total size of examined sequences (bp): 3303808 Total number of identified SSRs: 375 Number of SSR containing sequences: 311 Number of sequences containing more than 1 SSR: 43 Number of SSRs present in compound formation: 46 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 100 3 251 4 17 5 1 6 6 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 total AC - 5 2 1 1 9 AG - 5 2 1 1 1 1 1 12 CA - 8 3 4 2 1 1 1 20 CG - 1 1 2 CT - 4 6 2 1 2 1 1 17 GA - 4 7 3 2 3 1 1 21 GC - 2 1 3 GT - 1 1 TC - 6 3 1 1 1 12 TG - 1 1 1 3 AAC 1 1 AAG 2 2 1 5 ACA 1 1 1 3 ACG 1 1 ACT 1 1 AGA 2 2 AGC 10 4 2 4 1 2 23 AGG 2 4 6 AGT 1 1 2 ATA 1 1 ATC 1 1 2 ATG 1 1 2 CAA 2 1 1 4 CAC 5 1 2 1 9 CAG 13 8 5 2 1 2 1 32 CAT 1 1 CCG 3 3 CCT 1 1 CGA 3 2 1 6 CGC 1 1 CGG 1 1 2 CGT 3 2 1 6 CTA 1 1 CTC 1 1 CTG 8 3 3 1 15 CTT 1 1 2 GAA 3 1 1 1 6 GAC 2 2 4 GAG 1 1 2 GAT 1 1 GCA 10 7 7 2 1 1 1 29 GCG 3 3 GCT 8 4 1 3 16 GGA 3 3 GGC 7 2 9 GGT 1 1 2 GTA 1 1 1 3 GTC 2 3 1 6 GTG 2 1 1 4 GTT 1 1 TAC 1 1 TAG 1 1 TCA 2 1 3 TCC 1 1 TCG 2 3 1 1 1 8 TCT 2 1 1 4 TGA 1 1 2 TGC 2 1 3 TGG 1 1 2 TGT 1 1 TTC 2 2 TTG 1 1 ACAA 1 1 ACAG 1 1 AGAT 1 1 AGCC 1 1 AGTG 1 1 CAAT 1 1 CAGA 1 1 CCAG 1 1 CGAC 1 1 GAAG 1 1 GACA 1 1 GAGC 1 1 GGAA 1 1 GGGA 1 1 TAGA 1 1 TGAG 1 1 TGCT 1 1 CTCCT 1 1 ACAGAG 1 1 AGAGCC 1 1 CGCCAT 2 2 GAGACG 1 1 TGGCGA 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 total AC/GT - 15 6 4 3 2 2 1 33 AG/CT - 19 18 6 3 4 4 2 2 2 1 1 62 CG/CG - 2 1 1 1 5 AAC/GTT 3 3 2 2 1 11 AAG/CTT 12 5 3 1 21 AAT/ATT 1 1 ACC/GGT 8 4 3 1 1 17 ACG/CTG 24 11 5 3 2 45 ACT/ATG 4 2 1 1 8 AGC/CGT 40 27 15 11 4 3 3 1 104 AGG/CCT 9 4 1 14 AGT/ATC 5 3 1 2 1 12 CCG/CGG 13 3 1 1 18 AAAC/GTTT 1 1 AACG/CTTG 1 1 AAGG/CCTT 2 2 AATC/AGTT 1 1 ACAG/CTGT 1 1 1 3 ACCG/CTGG 1 1 ACTC/AGTG 2 2 AGAT/ATCT 2 2 AGCC/CGGT 1 1 2 AGCG/CGCT 1 1 AGGG/CCCT 1 1 AGAGG/CCTCT 1 1 ACAGAG/CTCTGT 1 1 ACCGCT/ATGGCG 1 1 ACGGAG/CCTCTG 1 1 AGAGCC/CGGTCT 1 1 AGCGGT/ATCGCC 2 2