Specifications ============== Sequence source file: "TAGI.021005" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 122282 Total size of examined sequences (bp): 79823548 Total number of identified SSRs: 10520 Number of SSR containing sequences: 9102 Number of sequences containing more than 1 SSR: 1085 Number of SSRs present in compound formation: 832 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 80 2 2996 3 6860 4 415 5 114 6 55 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 total A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 5 1 1 2 6 4 2 1 2 4 2 1 1 3 2 1 2 1 1 1 1 1 1 4 1 1 1 5 1 3 1 1 1 1 2 1 1 1 73 C - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 1 1 1 1 6 AC - 59 34 27 18 8 6 5 3 4 2 1 2 2 3 1 2 1 1 1 1 1 182 AG - 148 57 36 27 21 13 12 4 10 8 3 8 4 4 3 3 2 1 2 1 1 1 1 1 2 1 1 1 1 1 378 AT - 73 24 23 11 9 5 2 4 3 2 2 4 2 3 1 4 1 5 4 1 2 1 186 CA - 78 31 19 9 8 2 4 3 5 3 5 1 1 2 1 1 1 1 1 1 1 178 CG - 86 11 2 1 100 CT - 153 86 46 29 17 15 10 10 12 12 4 14 3 6 3 5 5 2 4 3 1 2 1 2 1 3 3 2 1 3 2 3 1 1 2 1 1 2 2 1 1 475 GA - 130 66 58 43 29 6 9 8 5 3 7 5 6 7 3 6 4 3 4 9 3 2 3 3 3 6 1 3 3 2 6 2 2 4 1 5 1 2 1 5 2 1 1 4 1 5 1 1 1 1 1 488 GC - 73 17 3 93 GT - 72 38 28 9 14 1 5 3 5 5 2 1 1 1 1 1 1 188 TA - 49 27 23 13 9 3 3 1 2 2 2 2 3 1 2 3 1 2 2 1 1 152 TC - 115 65 38 29 11 8 9 5 1 5 6 2 7 7 2 1 7 5 2 1 1 2 2 1 3 1 1 1 1 1 1 1 342 TG - 95 45 16 15 15 8 9 5 5 1 2 4 2 2 3 3 1 1 1 1 234 AAC 25 9 2 7 8 2 3 1 1 1 1 60 AAG 87 22 7 4 1 1 1 1 1 125 AAT 7 5 1 1 1 1 16 ACA 38 25 8 13 4 11 3 2 2 2 2 2 2 1 1 1 1 1 119 ACC 40 7 7 1 55 ACG 30 12 3 1 46 ACT 10 3 2 15 AGA 22 8 2 7 2 1 1 1 1 1 46 AGC 146 62 19 7 3 1 238 AGG 58 14 10 5 1 1 1 1 91 AGT 12 6 1 19 ATA 5 2 2 1 1 11 ATC 23 14 1 1 39 ATG 20 9 3 1 1 1 35 ATT 13 3 1 1 1 19 CAA 78 24 27 12 9 10 4 10 4 1 2 3 1 1 2 2 1 2 1 1 195 CAC 66 24 10 7 1 1 109 CAG 149 71 40 8 7 2 1 278 CAT 22 5 1 1 1 1 31 CCA 71 30 11 1 1 114 CCG 275 124 41 22 4 2 468 CCT 162 40 22 12 4 1 241 CGA 52 22 6 5 1 86 CGC 308 137 54 27 11 1 1 539 CGG 283 74 40 15 2 1 415 CGT 27 11 4 2 44 CTA 10 1 2 1 1 1 1 17 CTC 142 46 24 2 3 1 218 CTG 63 22 7 5 1 98 CTT 33 15 14 9 3 3 1 1 1 4 2 1 1 1 1 90 GAA 44 23 10 2 4 3 2 1 2 1 1 1 1 1 1 97 GAC 57 15 10 82 GAG 115 33 18 6 2 2 1 177 GAT 41 20 4 1 1 67 GCA 141 57 24 14 4 1 1 242 GCC 228 92 36 17 8 1 1 383 GCG 230 71 31 10 1 343 GCT 76 29 7 1 1 1 115 GGA 88 30 11 5 2 1 137 GGC 264 98 48 10 4 424 GGT 38 6 7 1 1 53 GTA 6 1 1 1 1 10 GTC 36 29 7 72 GTG 29 6 7 2 44 GTT 13 3 2 1 2 1 1 1 1 1 1 1 1 1 1 31 TAA 3 3 6 TAC 17 2 2 21 TAG 10 1 1 12 TAT 3 1 2 2 8 TCA 10 5 1 1 17 TCC 104 50 18 3 2 177 TCG 29 9 5 2 1 46 TCT 40 15 3 7 4 3 2 1 2 1 1 1 1 1 1 1 84 TGA 37 11 1 1 1 51 TGC 60 21 7 5 1 1 1 96 TGG 33 12 4 1 1 1 52 TGT 14 6 3 1 1 1 2 2 1 31 TTA 5 1 1 1 2 1 1 1 13 TTC 22 12 7 5 6 3 1 1 2 1 60 TTG 13 4 4 3 2 2 1 1 1 1 32 AAAC 1 1 2 AAAG 4 1 1 6 AAAT 2 2 AACA 3 1 4 AACC 1 1 2 AAGA 3 1 4 AAGG 1 1 AATG 1 1 2 ACAA 1 1 ACAG 1 1 ACAT 1 1 1 1 4 ACGC 3 3 ACGG 2 2 ACGT 1 1 ACTG 1 1 2 AGAA 1 1 AGAT 1 1 2 AGCA 1 2 3 AGCC 1 1 2 AGCG 4 4 AGGA 5 5 AGGC 1 1 AGGG 1 1 AGTC 4 1 5 AGTG 2 2 ATAA 1 1 ATAC 3 3 2 1 1 10 ATAG 1 2 1 1 5 ATCC 4 1 5 ATCT 1 1 2 ATGA 1 1 ATGC 3 3 ATGG 3 2 5 ATGT 1 1 1 3 ATTA 1 1 ATTC 1 1 CAAA 1 1 CAAG 2 2 CAAT 1 1 CACC 2 2 CACG 1 2 3 CAGC 1 1 CAGG 1 1 2 CATA 1 1 CATC 3 4 2 9 CATG 6 6 CCAG 1 1 CCAT 4 1 5 CCCT 4 4 CCGC 6 6 CCGG 2 2 CCGT 5 1 6 CCTA 1 1 CCTC 9 2 11 CCTG 2 2 CGAG 1 1 CGAT 1 1 CGCA 3 3 CGCC 7 1 8 CGCT 1 1 CGGA 2 2 CGGC 2 2 CGTA 2 2 CGTC 2 1 3 CGTG 1 1 CGTT 2 2 CTAG 1 1 CTAT 3 2 1 6 CTCA 1 1 CTCC 4 2 6 CTGC 1 2 3 CTGG 1 1 CTGT 2 2 4 CTTC 3 1 4 CTTG 1 1 CTTT 2 2 GAAA 2 2 GAAG 1 1 GAAT 1 1 GACG 1 1 GACT 1 1 GAGC 2 2 GAGG 4 2 6 GAGT 1 1 GATC 1 1 GATG 2 1 3 GATT 2 1 3 GCAA 1 1 GCAC 3 3 GCAG 1 1 2 GCAT 1 1 GCCA 1 1 GCCC 1 1 GCGA 5 5 GCGG 3 1 4 GCGT 4 4 GCTC 5 5 GCTG 1 1 GGAA 2 1 3 GGAC 3 2 5 GGAT 4 3 7 GGCA 1 1 GGCG 1 1 GGTT 2 2 GTAC 1 1 GTAT 1 1 GTCC 1 4 5 GTCT 1 1 2 GTGA 2 1 3 GTGC 3 3 GTTT 1 1 TAAA 1 1 TAAT 4 4 TACA 2 2 4 TACG 1 1 TAGA 1 1 TAGG 2 2 TATC 5 1 6 TATG 2 1 1 1 1 6 TCAG 1 1 TCCA 5 1 6 TCCC 5 5 TCCG 2 2 TCCT 4 1 5 TCGA 1 1 TCGT 1 1 TCTA 2 2 4 TCTG 1 1 TCTT 2 1 3 TGAA 2 2 4 TGAT 2 1 3 TGCA 4 4 TGCC 3 1 1 5 TGCG 2 2 TGGA 2 1 3 TGGT 3 3 TGTA 4 1 2 1 8 TGTC 1 1 TTAA 1 1 TTAT 1 1 TTCC 3 3 TTCT 2 2 1 1 6 TTGA 1 1 TTGC 1 1 2 TTGG 1 1 TTGT 1 1 2 TTTC 1 3 4 TTTG 1 1 AACCA 1 1 AACCC 1 1 AAGAG 1 1 AAGGA 1 1 AAGGG 4 4 AATAG 2 2 ACACA 1 1 AGAAA 1 1 AGAAG 1 1 AGACT 1 1 2 AGATG 2 2 AGCCC 1 1 AGGAG 1 1 AGGCG 2 2 AGGGA 1 1 AGTGC 1 1 ATGAG 1 1 CAAGC 1 1 CACCA 2 2 CAGCC 1 1 CAGGG 1 1 CATAC 1 1 CCAAA 1 1 CCAAC 1 1 CCAGT 1 1 CCCAC 1 1 CCCCA 1 1 CCCCT 1 1 CCCTA 1 1 CCCTC 1 1 CCGAC 2 2 CCTCC 1 1 CCTTC 3 3 CGATA 4 4 CTCCC 1 1 2 CTCTC 5 5 CTCTG 1 1 CTCTT 1 1 CTGCA 1 1 CTGTA 2 2 CTGTG 1 1 CTTCC 1 1 CTTTT 1 1 GACCA 1 1 GAGAA 2 2 GAGGA 1 1 GATGG 1 1 GATTG 1 1 2 GATTT 1 1 GCACA 2 2 GCAGG 1 1 GCATA 1 1 GCATC 1 1 GCTGT 1 1 GCTTG 1 1 GGAAA 1 1 GGAGA 4 4 GGCGG 1 1 GGCTG 1 1 GGGAG 1 1 GGGTT 1 1 GGTCG 1 1 GTGCC 1 1 GTGCT 1 1 TAATG 1 1 TACTG 1 1 TATCG 8 8 TCCAA 1 1 TCTCA 1 1 TCTCC 1 1 TCTCT 2 1 3 TCTGA 1 1 TCTTT 1 1 TGAGA 1 1 TGCCA 1 1 TGTGC 1 1 TTGGA 1 1 TTTCT 1 1 TTTTG 1 1 AAACAA 1 1 AATCCA 1 1 ACACCA 1 1 ACGGCG 1 1 AGAAGG 1 1 2 AGCTAG 1 1 ATCAGA 1 1 ATGGAG 2 2 ATTATC 1 1 CAACAT 1 1 CAACGG 2 2 CACGGC 1 1 CAGCTC 1 1 CCCATT 1 1 CCCCCG 1 1 CCCGAC 1 1 CCCGCA 1 1 CCCGCC 1 1 CCGCCA 2 2 CCGCCT 1 1 CGGGAA 1 1 CTCCAC 1 1 CTCTCC 1 1 CTGCCA 1 1 CTTCGG 1 1 GAAGAG 1 1 GACCTC 1 1 GAGCAG 1 1 GAGGAA 1 1 GCATTG 1 1 GCTCAG 1 1 GGAGAG 1 1 GGCCTT 1 1 GGCTTG 1 1 GTGGCC 1 1 GTTTGC 1 1 TAAAGA 1 1 TATAGA 1 1 TATCTA 1 1 TCCACC 1 1 TCCCAG 1 1 TCCCTC 1 1 TCTCCA 1 1 TGATTC 1 1 TGCCCA 1 1 TGCTGA 1 1 TGGTAT 1 1 TGTTTT 1 1 TTCTCT 1 1 TTCTGA 1 1 TTTACA 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 total A/T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 5 1 1 2 6 4 3 2 2 4 2 1 2 3 2 1 2 2 1 1 1 1 1 4 1 1 1 2 5 1 3 1 1 1 1 2 1 1 1 79 C/G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 1 AC/GT - 304 148 90 51 45 17 23 14 19 9 11 7 3 7 6 5 6 2 2 3 1 1 2 1 1 2 1 1 782 AG/CT - 546 274 178 128 78 42 40 27 28 28 20 29 20 24 11 15 18 11 12 14 6 6 6 5 4 11 5 6 3 6 8 5 3 7 3 2 4 5 3 2 3 1 6 3 2 2 8 1 5 1 3 1 2 1 1 1683 AT/AT - 122 51 46 24 18 8 5 5 5 4 4 4 2 5 4 1 6 4 5 1 2 2 5 2 2 1 338 CG/CG - 159 28 5 1 193 AAC/GTT 181 71 44 37 25 28 12 13 10 4 7 7 6 2 2 5 2 1 2 2 1 2 1 1 1 1 468 AAG/CTT 248 95 43 34 14 17 9 5 3 3 9 1 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 502 AAT/ATT 36 15 3 5 4 5 2 1 1 1 73 ACC/GGT 277 85 46 12 2 3 1 1 427 ACG/CTG 338 121 40 17 4 1 1 1 523 ACT/ATG 135 46 14 2 3 3 1 1 1 206 AGC/CGT 528 239 99 33 12 4 3 2 920 AGG/CCT 669 213 103 33 14 4 1 2 1 1 1041 AGT/ATC 83 32 5 2 2 1 2 1 128 CCG/CGG 1588 596 250 101 30 4 1 2 2572 AAAC/GTTT 9 1 1 1 12 AAAG/CTTT 14 11 1 1 1 28 AAAT/ATTT 4 1 5 AACC/GGTT 7 1 8 AACG/CTTG 1 2 3 AACT/ATTG 5 1 1 7 AAGC/CGTT 5 4 9 AAGG/CCTT 19 2 1 22 AAGT/ATTC 1 1 AATC/AGTT 1 1 AATG/ACTT 4 3 1 8 AATT/AATT 5 1 6 ACAG/CTGT 4 4 1 9 ACAT/ATGT 13 9 6 3 1 1 2 1 1 37 ACCC/GGGT 2 2 ACCG/CTGG 2 2 ACCT/ATGG 12 6 1 19 ACGC/CGTG 20 2 22 ACGG/CCTG 10 9 1 20 ACGT/ATGC 19 19 ACTC/AGTG 6 1 7 ACTG/ACTG 2 1 3 AGAT/ATCT 11 9 4 2 26 AGCC/CGGT 2 2 1 5 AGCG/CGCT 18 18 AGCT/ATCG 3 1 4 AGGC/CCGT 13 7 2 22 AGGG/CCCT 27 6 33 AGGT/ATCC 18 6 3 27 AGTC/AGTC 4 2 6 CCCG/CGGG 17 2 1 20 CCGG/CCGG 4 4 AAAAC/GTTTT 1 1 AAAAG/CTTTT 3 1 4 AAACC/GGTTT 2 2 AAACT/ATTTG 1 1 AAAGG/CCTTT 1 1 2 AACAC/GTGTT 1 1 AACCC/GGGTT 3 3 AACCG/CTTGG 1 1 AACCT/ATTGG 1 1 1 3 AAGAG/CTCTT 5 2 1 8 AAGCC/CGGTT 1 1 AAGGG/CCCTT 9 9 AATAG/ATCTT 2 2 AATCC/AGGTT 1 1 AATGT/ACATT 1 1 ACACC/GGTGT 2 2 ACACG/CTGTG 4 4 ACAGC/CGTGT 2 2 ACATG/ACTGT 2 1 3 ACCAG/CTGGT 1 1 ACCAT/ATGGT 1 1 ACCCC/GGGGT 2 2 ACCCG/CTGGG 3 3 ACCCT/ATGGG 1 1 2 ACGAG/CTCTG 1 1 ACGAT/ATGCT 4 4 ACGGC/CCGTG 1 1 ACGGT/ATGCC 1 1 ACGTC/AGTGC 1 1 ACGTG/ACTGC 1 1 ACTAG/ATCTG 1 1 1 3 ACTCT/AGATG 3 1 4 AGAGG/CCTCT 11 1 12 AGAGT/ATCTC 1 1 AGCAT/ATCGT 9 9 AGCCC/CGGGT 3 3 AGCGT/ATCGC 1 1 AGGCG/CCGCT 2 2 AGGGC/CCCGT 1 1 2 AGGGG/CCCCT 4 2 6 AGGTC/AGTCC 1 1 CCCCG/CGGGG 1 1 AAAAAC/GTTTTT 2 2 AAACGC/CGTTTG 1 1 AAAGAG/CTCTTT 1 1 AAAGAT/ATTTCT 1 1 AAATCC/AGGTTT 1 1 AAATGT/ACATTT 1 1 AACACC/GGTTGT 1 1 AACATC/AGTTGT 1 1 AACCAT/ATTGGT 1 1 AACCCG/CTTGGG 1 1 AACCGG/CCTTGG 1 1 AACCGT/ATTGGC 1 1 AACGGC/CCGTTG 2 2 AACGGG/CCCTTG 1 1 AAGACT/ATTCTG 2 2 AAGAGG/CCTTCT 2 2 AAGCCG/CGGCTT 1 1 AAGGAG/CCTCTT 1 1 2 AAGGGT/ATTCCC 1 1 AATAGT/ATCATT 1 1 AATCAG/AGTCTT 1 1 ACCCCG/CTGGGG 1 1 ACCCGC/CGTGGG 1 1 ACCGCC/CGGTGG 2 2 ACCGGC/CCGTGG 1 1 ACCTCC/AGGTGG 2 2 ACCTCG/AGCTGG 1 1 ACCTCT/AGATGG 2 2 ACGACT/ATGCTG 1 1 ACGGCC/CCGGTG 1 1 ACGGCG/CCGCTG 1 1 ACGGGT/ATGCCC 1 1 ACGGTG/ACTGCC 1 1 AGAGCT/ATCTCG 1 1 AGAGGG/CCCTCT 1 2 3 AGAGGT/ATCTCC 1 1 AGATAT/ATATCT 1 1 2 AGCAGG/CCTCGT 1 1 AGCTCC/AGGTCG 1 1 AGGCGG/CCGCCT 1 1 AGGCTC/AGTCCG 1 1 AGGGTC/AGTCCC 1 1 CCCCCG/CGGGGG 2 2