Specifications ============== Sequence source file: "VVGI.100604" Definement of microsatellites (unit size / minimum number of repeats): (1/100) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 23871 Total size of examined sequences (bp): 16980355 Total number of identified SSRs: 1864 Number of SSR containing sequences: 1646 Number of sequences containing more than 1 SSR: 183 Number of SSRs present in compound formation: 137 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 933 3 812 4 63 5 28 6 28 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 total AC - 5 2 2 3 1 1 1 15 AG - 38 30 16 7 5 2 1 1 7 2 2 4 1 1 1 1 1 1 1 1 1 1 1 126 AT - 51 29 20 16 17 4 4 3 4 1 2 1 2 2 3 1 1 161 CA - 6 2 1 1 1 11 CG - 1 1 CT - 45 20 16 15 12 5 3 5 3 3 4 2 1 1 1 1 1 1 1 1 2 1 1 145 GA - 34 20 25 7 5 2 3 5 4 2 1 1 2 1 1 1 1 1 2 1 2 1 2 1 1 1 1 3 3 1 1 1 1 138 GT - 2 1 2 1 1 7 TA - 45 30 15 23 13 4 2 1 2 2 5 1 5 1 1 1 2 1 1 155 TC - 45 29 19 11 10 6 6 4 4 4 1 1 1 3 1 4 1 1 1 152 TG - 11 5 3 2 1 22 AAC 1 2 1 4 AAG 18 2 4 3 2 1 2 1 33 AAT 11 11 3 2 1 1 1 1 1 32 ACA 3 1 1 2 7 ACC 11 7 1 19 ACG 3 3 ACT 1 1 AGA 19 7 5 1 4 2 38 AGC 11 7 2 1 21 AGG 5 3 1 1 1 11 AGT 1 1 ATA 3 3 2 1 1 1 11 ATC 3 2 2 2 9 ATG 10 1 1 12 ATT 9 7 1 1 1 1 2 22 CAA 3 9 1 13 CAC 5 3 4 1 13 CAG 19 11 3 3 2 38 CAT 5 5 2 1 13 CCA 10 5 5 1 21 CCG 2 1 3 CCT 5 5 3 1 14 CGA 1 1 2 CGC 1 1 2 CGG 1 1 CGT 1 1 CTA 1 1 CTC 11 3 2 1 17 CTG 3 2 5 CTT 18 7 4 1 2 32 GAA 25 8 5 1 2 2 1 1 45 GAC 2 2 GAG 4 2 3 2 11 GAT 16 10 3 1 30 GCA 14 6 5 1 1 27 GCC 4 1 1 6 GCG 1 1 GCT 7 4 11 GGA 2 4 1 7 GGC 6 1 1 8 GGT 10 2 6 1 1 20 GTA 2 2 GTC 2 2 GTG 2 4 2 8 GTT 1 1 TAA 7 1 3 1 1 13 TAT 12 4 1 1 1 19 TCA 9 4 1 2 16 TCC 7 1 1 1 10 TCG 3 3 6 TCT 16 12 5 2 2 1 38 TGA 11 4 2 2 1 1 21 TGC 6 5 2 1 14 TGG 4 5 5 1 1 16 TGT 3 3 TTA 9 9 5 1 1 1 2 28 TTC 27 9 4 1 1 1 1 1 45 TTG 1 1 2 AAAG 1 1 AAAT 5 5 AATA 1 1 AATC 1 1 AATT 1 1 AGAA 1 1 AGGA 2 2 ATAA 2 2 ATAC 1 1 ATTT 2 2 CAAA 1 1 CCAT 1 1 CTAT 1 1 CTCC 1 1 CTGG 1 1 CTTT 2 1 1 4 GAAA 1 1 GATC 1 1 2 GATG 1 1 GCAA 1 1 GTTT 1 2 3 TAAA 1 1 TAAT 1 1 TATC 1 1 TATG 2 2 TATT 1 1 2 TCTT 1 1 2 TGCA 1 1 TGTT 1 1 TTAA 1 1 TTAT 1 1 TTGT 1 1 TTTA 9 1 1 11 TTTC 1 2 3 TTTG 1 1 AAAAC 1 1 AAAAT 2 2 AACAA 1 1 AATAA 1 1 ATGAT 1 1 ATTTT 1 1 CAAAA 1 1 CTCTC 1 1 GAAAA 1 1 GAGGA 1 1 GGGGT 1 1 GTTTG 1 1 TATTT 1 1 TCCTT 1 1 TCTGC 1 1 TGAAT 1 1 TGTTT 1 1 TTTCT 4 4 TTTTA 3 1 4 TTTTC 2 2 AAGGAG 1 1 AGACCC 1 1 CAGCAA 1 1 CAGCCT 1 1 CAGGGT 3 3 CCTGAA 1 1 CTCTCC 2 1 3 CTGCAC 1 1 CTGTCC 1 1 CTGTTG 1 1 GAAAGA 1 1 GAAGGA 1 1 GAGCAA 1 1 GCAGGA 1 1 GCTCAG 1 1 GGAAGA 1 1 GGAGCC 1 1 GTCCTA 1 1 GTGGGA 1 1 TCAGGC 1 1 TCTCCC 1 1 TCTCTT 1 1 TGTATA 1 1 TTTTTC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 total AC/GT - 24 10 8 6 1 1 1 1 1 1 1 55 AG/CT - 162 99 76 40 32 15 13 15 18 11 5 5 6 5 3 8 1 1 3 3 1 1 2 2 3 2 1 1 1 3 1 2 2 1 1 1 1 2 3 1 3 1 1 1 1 1 561 AT/AT - 96 59 35 39 30 8 6 4 6 3 5 3 6 2 3 4 2 2 1 1 1 316 CG/CG - 1 1 AAC/GTT 11 11 3 1 3 1 30 AAG/CTT 123 45 23 12 9 5 6 5 1 2 231 AAT/ATT 51 35 15 4 5 4 2 1 4 2 1 1 125 ACC/GGT 42 26 21 4 3 1 97 ACG/CTG 22 9 5 1 37 ACT/ATG 38 16 6 3 1 1 65 AGC/CGT 48 27 12 4 3 1 95 AGG/CCT 34 18 9 4 2 1 2 70 AGT/ATC 17 14 5 2 3 41 CCG/CGG 14 3 4 21 AAAC/GTTT 2 2 3 7 AAAG/CTTT 3 4 4 1 12 AAAT/ATTT 20 4 1 25 AAGC/CGTT 1 1 AAGG/CCTT 2 2 AATC/AGTT 1 1 AATT/AATT 2 1 3 ACAT/ATGT 2 1 3 ACCG/CTGG 1 1 ACCT/ATGG 1 1 ACGT/ATGC 1 1 AGAT/ATCT 1 1 2 AGCT/ATCG 1 1 2 AGGG/CCCT 1 1 AGGT/ATCC 1 1 AAAAC/GTTTT 4 4 AAAAG/CTTTT 7 7 AAAAT/ATTTT 8 1 9 AAACC/GGTTT 1 1 AAAGG/CCTTT 1 1 AACTT/AATTG 1 1 ACCCC/GGGGT 1 1 ACGAG/CTCTG 1 1 ACTAT/ATATG 1 1 AGAGG/CCTCT 1 1 2 AAAAAG/CTTTTT 1 1 AAAGAG/CTCTTT 1 1 2 AACAGC/CGTTGT 1 1 AACCTG/ACTTGG 1 1 AACGAC/CTGTTG 1 1 AAGAGC/CGTTCT 1 1 AAGAGG/CCTTCT 1 1 AAGGAG/CCTCTT 2 2 ACAGGG/CCCTGT 1 1 ACATAT/ATATGT 1 1 ACCCAG/CTGGGT 1 1 ACCCTC/AGTGGG 1 1 ACCTGC/ACGTGG 1 1 AGAGGG/CCCTCT 3 1 4 AGCAGG/CCTCGT 1 1 AGCCGG/CCTCGG 1 1 AGCCTC/AGTCGG 1 1 AGGATC/AGTCCT 1 1 AGGCTC/AGTCCG 2 2 AGGGTC/AGTCCC 3 3