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07-12-13 |
The Physcomitrella genome paper has been published (contact) |
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07-10-31 |
The Physcomitrella genome workshop |
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07-04-24 |
The Physcomitrella patens genome v1.1 has been ridded of bacterial contaminations and is now available for BLAST and sequence retrieval (scaffolds, transcripts and proteins). For details of the release see JGI and mossgenome.org. |
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07-03-02 |
The plant transcription associated protein database, PlanTAPDB, is now available from the Transcriptome menu. For details see Richardt et al. (2007) Plant Physiol. |
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07-02-26 |
The virtual transcriptome, cluster run PP1206, has been released. This is the largest ever dataset, built from more than 390,000 ESTs, including novel sequences produced for the genome annnotation. The databases (including predicted ORFs) are available for BLAST and sequence retrieval. |
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06-10-27 |
The PhyscomeProjectWiki has officially been opened. The wiki is meant to document and coordinate the Physcomitrella genome consortiums' efforts to assemble and annotate the moss genome. See FAQ section on how to participate and get account data to read the articles. |
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06-06-16 |
The cosmoss.org mailing list has officially been opened. See Help/mailing lists. |
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06-06-15 |
Relaunch of the cosmoss.org menu system. We hope you enjoy it. |
To come...
- the integrated genome browser, including e.g. the genetic map as well as mapped transposons and ESTs
Version / release history
| 07-04-24 |
the P. patens genome release v1.1 goes online
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| 07-02-26 |
new cluster run (not annotated) from
Dec., 2006 (PP1206) containing a lot of additional sequences
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| 06-01-03 |
second half of JGI WGS traces
available
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| 05-11-27 | Full length fosmid clones of genomic DNA available (sequenced by JGI) | |
| 05-10-01 |
new cluster run (not annotated) from
Aug., 2005: additional sequences, use of mate pair information
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| 05-09-25 |
first half of JGI WGS traces
available
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| 05-05-15 |
Clustered EST data of Tortula
ruralis and Ceratodon purpureus available
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| 04-04-10 |
Annotated Physcomitrella
transcriptome 03/04 V1.5 available
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| 04-03-29 |
new cluster run from 04-03-27: additional
sequences, elimination of intronic sequences from seeds and new
Physcomitrella specific ORF prediction
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| 04-02-12 |
new cluster run from 04-02-10 containing
~130 new sequences. We remove vector contamination even more
stringently now.
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| 04-01-19 |
fixed bug with nofilter-switch
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| 03-11-24 |
fixed bug in results processing
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| 03-11-14 |
new cluster run from 03-11-05 containing
~32,800 new sequences. In addition, we now mask known plant UTRs and
filter against the P.p. plastome.
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| 03-11-10 |
fixed bug in queryname filtering
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| 03-11-07 |
fixed alignment threshold bug
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| 03-09-18 |
new cluster run from 03-09-03 containing
seed quality values
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| 03-09-10 |
fixed bug in sequence conversion from
textbox (FASTA)
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| 03-09-08 |
first release (v1.0) containing a cluster
run from 03-08-29
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