From PhyscomeProjectWiki

This page is under construction...

It is meant to document both the annotation process and the resulting data accessible via the cosmoss.org interfaces.

You can browse V3.3 using gbrowse: http://www.cosmoss.org/fgb2/gbrowse/V3.3/

The Physcomitrella patens V3.3 genome annotation

Improved Locus Definition - cosmoss.org gene ids (CGIs)

CGIs provide the unique address of a gene (protein-coding and non-protein-coding genes) on a respective assembly. CGIs also function as primary IDs/accession numbers to access genes and gene products in V3.3. On the V3 assembly CGIs can either be localized on pseudo-chromosomes or scaffolds. Locus ids are ordered from 5' to the 3' end of the reference sequence.

CGI Syntax

Like a German car licence plate, the CGI carries a lot of information about the gene product you're looking at: Comprising the fields species, assembly version, reference sequence, locus index, type and (sequence) index.