Contaminations/EST based analysis

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EST based analysis

Andreas, 06.10.2006

Using the results from the EST_mapping out of the 2,538 8x Scaffolds_main_genome 631 Scaffolds yield at least one significant EST/Scaffold alignemnt.

1,905 Scaffolds enclose NO EST hit.

Image:8x_no_vs_EST_hit.png

Scaffold lengths distribution: Scaffolds with EST hit compared to Scaffolds w/o EST hit

Image:8x_no_vs_EST_hit_length_zoomout.png

Image:8x_no_vs_EST_hit_length.png

Conclusion

--Lang 16:02, 25 October 2006 (CEST)

The exsistence of EST evidence for a given scaffold clearly is an indicator, but cannot be used as a sole separator because true Physcomitrella scaffolds consisting mainly of non-coding regions would be selected as well.

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