Genome Annotation/V3.3

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This page is under construction...

It is meant to document both the annotation process and the resulting data accessible via the cosmoss.org interfaces.

You can browse V3.3 using gbrowse: http://www.cosmoss.org/fgb2/gbrowse/V3.3/

The Physcomitrella patens V3.3 genome annotation

Improved Locus Definition - cosmoss.org gene ids (CGIs)

CGIs provide the unique address of a gene (protein-coding and non-protein-coding genes) on a respective assembly. CGIs also function as primary IDs/accession numbers to access genes and gene products in V3.3. On the V3 assembly CGIs can either be localized on pseudo-chromosomes or scaffolds. Locus ids are ordered from 5' to the 3' end of the reference sequence.


CGI Syntax

Like a German car licence plate, the CGI carries a lot of information about the gene product you're looking at: Comprising the fields species, assembly version, reference sequence, locus index, type and (sequence) index.

Image:CGI_V3.1.png

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